RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA1022139", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 7 ✖

tax_kingdom 1

  • Bacillati · 7 ✖

bioproject 1

  • PRJNA1022139 · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10364842 10364842 PRJNA1022139_P_NODE_27869_length_274_cov_2.636816_g27764_i0 PRJNA1022139 27869 274 2.636816 7.22487584 Metamycoplasma gateae 35769 Bacteria Bacteria 52.8 0.025   NTclustered gi|2668340636|gb|CP143578.1| 35769 g27764 i0 100 0.102189781021898 28 0 10 0 218 245 346130 346157 Metamycoplasma gateae strain 3700 chromosome, complete genome blastn 28 52.8 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Metamycoplasma Metamycoplasma gateae
11206887 11206887 PRJNA1022139_P_NODE_35729_length_250_cov_0.870056_g35624_i0 PRJNA1022139 35729 250 0.870056 2.17514 FCB group 1783270 Bacteria Bacteria 182 2.769999999999999e-41   NTclustered gi|2621786365|emb|OY782823.1| 1898209 g35624 i0 82.692 26.196 208 33 83 3 28 234 1126939 1127144 MAG: Acholeplasmataceae bacterium isolate 45ae5b24-82d0-47e0-b430-a4ed073fe207 genome assembly, chromosome: 1 blastn 6549 182 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae   Acholeplasmataceae bacterium
27351290 27351290 PRJNA1022139_P_NODE_28343_length_273_cov_1.180000_g28238_i0 PRJNA1022139 28343 273 1.18 3.2214 Mycoplasma sp. OR19 2108 Bacteria Bacteria 44.3 0.0159   NR WP_174892811.1 2742195 g28238 i0 32.4 0.78021978021978 71 47 78 1 226 14 2051 2120 WP_174892811.1 SGNH/GDSL hydrolase family protein [Mycoplasma sp. OR1901] diamond 213 44.3 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma sp. OR1901
29371875 29371875 PRJNA1022139_P_NODE_38589_length_246_cov_0.890173_g38484_i0 PRJNA1022139 38589 246 0.890173 2.18982558 Mycoplasmopsis maculosa 114885 Bacteria Bacteria 44.7 0.00687   NR WP_129647077.1 114885 g38484 i0 43.8 1.67073170731707 48 27 58.5 0 2 145 104 151 WP_129647077.1 leucine-rich repeat protein [Mycoplasmopsis maculosa] diamond 411 44.7 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis maculosa
30224476 30224476 PRJNA1022139_P_NODE_43052_length_241_cov_0.916667_g42947_i0 PRJNA1022139 43052 241 0.916667 2.20916747 Acholeplasmatales bacterium 2053494 Bacteria Bacteria 47 0.00121   NR MCR4897820.1 2053494 g42947 i0 32.8 4.34439834024896 64 43 79.7 0 49 240 1517 1580 MCR4897820.1 leucine-rich repeat domain-containing protein [Acholeplasmatales bacterium] diamond 1047 47 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales     Acholeplasmatales bacterium
32057998 32057998 PRJNA1022139_P_NODE_19018_length_320_cov_0.914980_g18913_i0 PRJNA1022139 19018 320 0.91498 2.927936 Mycoplasmataceae bacterium 2685873 Bacteria Bacteria 54.7 5.7e-6   NR MDR0675121.1 2685873 g18913 i0 33 2.671875 97 64 90.9 1 296 6 297 392 MDR0675121.1 leucine-rich repeat domain-containing protein [Mycoplasmataceae bacterium] diamond 855 54.7 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae   Mycoplasmataceae bacterium
32784649 32784649 PRJNA1022139_P_NODE_5640_length_547_cov_1.360759_g5536_i0 PRJNA1022139 5640 547 1.360759 7.44335173 Mycoplasmataceae bacterium 2685873 Bacteria Bacteria 49.7 0.0024   NR MDR0739416.1 2685873 g5536 i0 45.8 0.323583180987203 59 31 32.4 1 546 370 343 400 MDR0739416.1 leucine-rich repeat domain-containing protein [Mycoplasmataceae bacterium] diamond 177 49.7 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae   Mycoplasmataceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;