RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA1022139", tax_clade = "PVC group" and tax_phylum = "Kiritimatiellota"

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tax_superkingdom 1

tax_phylum 1

  • Kiritimatiellota · 5 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 5 ✖

bioproject 1

  • PRJNA1022139 · 5 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1436517 1436517 PRJNA1022139_P_NODE_3882_length_643_cov_3.914035_g3778_i0 PRJNA1022139 3882 643 3.914035 25.16724505 Kiritimatiellia bacterium 2212473 Bacteria Bacteria 109 8.49e-27   NR MDA3872580.1 2212473 g3778 i0 48.7 1.04043545878694 113 39 52.7 2 561 223 5 98 MDA3872580.1 MGMT family protein [Kiritimatiellia bacterium] diamond 669 109 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia       Kiritimatiellia bacterium
27256143 27256143 PRJNA1022139_P_NODE_20623_length_308_cov_1.812766_g20518_i0 PRJNA1022139 20623 308 1.812766 5.58331928 Kiritimatiellia bacterium 2212473 Bacteria Bacteria 45.4 0.00505   NR MBQ6914451.1 2212473 g20518 i0 50 0.38961038961039 40 20 39 0 308 189 135 174 MBQ6914451.1 dephospho-CoA kinase [Kiritimatiellia bacterium] diamond 120 45.4 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia       Kiritimatiellia bacterium
27603861 27603861 PRJNA1022139_P_NODE_19864_length_314_cov_0.958506_g19759_i0 PRJNA1022139 19864 314 0.958506 3.00970884 Kiritimatiellia bacterium 2212473 Bacteria Bacteria 44.3 0.0208   NR HPF99757.1 2212473 g19759 i0 37.2 0.745222929936306 78 45 73.6 2 2 232 42 116 HPF99757.1 SAM-dependent chlorinase/fluorinase [Kiritimatiellia bacterium] diamond 234 44.3 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia       Kiritimatiellia bacterium
32501238 32501238 PRJNA1022139_P_NODE_21219_length_304_cov_1.536797_g21114_i0 PRJNA1022139 21219 304 1.536797 4.67186288 Kiritimatiellia bacterium 2212473 Bacteria Bacteria 47 0.00247   NR MDD5676667.1 2212473 g21114 i0 32.5 2.35855263157895 83 54 81.9 1 284 36 721 801 MDD5676667.1 ATP-binding protein [Kiritimatiellia bacterium] diamond 717 47 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia       Kiritimatiellia bacterium
32879086 32879086 PRJNA1022139_P_NODE_11660_length_393_cov_1.718750_g11555_i0 PRJNA1022139 11660 393 1.71875 6.7546875 Kiritimatiellota bacterium 2599938 Bacteria Bacteria 90.9 2.76e-18   NR MCL1920003.1 2599938 g11555 i0 51 4.72519083969466 102 42 77.9 2 87 392 64 157 MCL1920003.1 sugar phosphate nucleotidyltransferase [Kiritimatiellota bacterium] diamond 1857 90.9 1 Bacteria PVC group Pseudomonadati Kiritimatiellota         Kiritimatiellota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;