RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1022139" and tax_clade = "Methanomada group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Methanomada group · 3 ✖

bioproject 1

  • PRJNA1022139 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28329760 28329760 PRJNA1022139_P_NODE_30866_length_263_cov_2.389474_g30761_i0 PRJNA1022139 30866 263 2.389474 6.28431662 Methanobrevibacter sp. 66852 Archaea Archaea 49.3 2.13e-4   NR WP_407392179.1 66852 g30761 i0 61.5 0.444866920152091 39 15 44.5 0 2 118 229 267 WP_407392179.1 tetratricopeptide repeat protein [Methanobrevibacter sp.] diamond 117 49.3 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
29750415 29750415 PRJNA1022139_P_NODE_3091_length_712_cov_1.868545_g2992_i0 PRJNA1022139 3091 712 1.868545 13.3040404 Methanobacterium lacus 877455 Archaea Archaea 46.2 0.0348   NR WP_013645769.1 877455 g2992 i0 19.7 0.661516853932584 157 111 65.3 5 43 507 6 149 WP_013645769.1 hypothetical protein [Methanobacterium lacus] diamond 471 46.2 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium lacus
32595920 32595920 PRJNA1022139_P_NODE_25760_length_282_cov_1.373206_g25655_i0 PRJNA1022139 25760 282 1.373206 3.87244092 Methanobrevibacter sp. 66852 Archaea Archaea 49.3 3e-4   NR WP_330041221.1 66852 g25655 i0 35 3.07446808510638 80 45 79.8 2 23 247 165 242 WP_330041221.1 Ig-like domain-containing protein [Methanobrevibacter sp.] diamond 867 49.3 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;