RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1022139", tax_clade = "FCB group" and tax_phylum = "Ignavibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Ignavibacteriota · 6 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 6 ✖

bioproject 1

  • PRJNA1022139 · 6 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20129952 20129952 PRJNA1022139_P_NODE_15976_length_344_cov_1.988930_g15871_i0 PRJNA1022139 15976 344 1.98893 6.8419192 Ignavibacteria bacterium GWA2_35_9 1798418 Bacteria Bacteria 161 8.39e-45   NR OGU29913.1 1798418 g15871 i0 65.8 8.94767441860465 114 39 99.4 0 2 343 12 125 OGU29913.1 MAG: phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) [Ignavibacteria bacterium GWA2_35_9] diamond 3078 161 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium GWA2_35_9
28771810 28771810 PRJNA1022139_P_NODE_15187_length_352_cov_1.010753_g15082_i0 PRJNA1022139 15187 352 1.010753 3.55785056 Ignavibacteria bacterium 2053306 Bacteria Bacteria 52.8 3.59e-5   NR MDP3444116.1 2053306 g15082 i0 37.1 0.894886363636364 105 63 87.8 2 1 309 214 317 MDP3444116.1 IPT/TIG domain-containing protein [Ignavibacteria bacterium] diamond 315 52.8 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium
28993245 28993245 PRJNA1022139_P_NODE_35968_length_249_cov_1.420455_g35863_i0 PRJNA1022139 35968 249 1.420455 3.53693295 Ignavibacteria bacterium 2053306 Bacteria Bacteria 55.5 1.23e-6   NR MDP3444116.1 2053306 g35863 i0 39.8 1 83 47 96.4 1 245 6 32 114 MDP3444116.1 IPT/TIG domain-containing protein [Ignavibacteria bacterium] diamond 249 55.5 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium
31046297 31046297 PRJNA1022139_P_NODE_18575_length_323_cov_1.232000_g18470_i0 PRJNA1022139 18575 323 1.232 3.97936 Ignavibacteria bacterium 2053306 Bacteria Bacteria 82.4 6.37e-16   NR MDP3444116.1 2053306 g18470 i0 41.1 0.993808049535604 107 62 99.4 1 1 321 76 181 MDP3444116.1 IPT/TIG domain-containing protein [Ignavibacteria bacterium] diamond 321 82.4 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium
31836393 31836393 PRJNA1022139_P_NODE_40677_length_244_cov_0.871345_g40572_i0 PRJNA1022139 40677 244 0.871345 2.1260818 Ignavibacteria bacterium 2053306 Bacteria Bacteria 49.7 1.3e-4   NR MDP3444116.1 2053306 g40572 i0 44.4 0.774590163934426 63 35 77.5 0 11 199 95 157 MDP3444116.1 IPT/TIG domain-containing protein [Ignavibacteria bacterium] diamond 189 49.7 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium
32650696 32650696 PRJNA1022139_P_NODE_9100_length_439_cov_3.043716_g8995_i0 PRJNA1022139 9100 439 3.043716 13.36191324 Pseudomonadati 3379134 Bacteria Bacteria 105 3.13e-25   NR WP_290664902.1 795750 g8995 i0 70.4 4.98861047835991 71 21 48.5 0 2 214 108 178 WP_290664902.1 MULTISPECIES: inorganic diphosphatase [Ignavibacterium] diamond 2190 106 0.990566037735849 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Ignavibacteriaceae Ignavibacterium  

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;