RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1022139", tax_clade = "FCB group" and tax_phylum = "Candidatus Hydrogenedentota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Hydrogenedentota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA1022139 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19287349 19287349 PRJNA1022139_P_NODE_30456_length_265_cov_1.604167_g30351_i0 PRJNA1022139 30456 265 1.604167 4.25104255 root 1 Root_unresolved Root_unresolved 136 1.82e-38   NR RME88376.1 2030809 g30351 i0 70.1 8.84150943396226 87 26 98.5 0 263 3 36 122 RME88376.1 MAG: peroxiredoxin [Candidatus Hydrogenedentota bacterium] diamond 2343 136 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium
32153021 32153021 PRJNA1022139_P_NODE_36338_length_249_cov_0.875000_g36233_i0 PRJNA1022139 36338 249 0.875 2.17875 Candidatus Hydrogenedentota bacterium 2030809 Bacteria Bacteria 83.2 9.79e-17   NR GMV91140.1 2030809 g36233 i0 60 2.98795180722892 60 24 72.3 0 67 246 37 96 GMV91140.1 MAG: MBL fold metallo-hydrolase [Candidatus Hydrogenedentota bacterium] diamond 744 83.2 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium
32216375 32216375 PRJNA1022139_P_NODE_43538_length_234_cov_2.614907_g43433_i0 PRJNA1022139 43538 234 2.614907 6.11888238 Candidatus Hydrogenedentota bacterium 2030809 Bacteria Bacteria 55.8 7.78e-7   NR MBN2308327.1 2030809 g43433 i0 38.8 2.06410256410256 80 46 98.7 1 2 232 181 260 MBN2308327.1 SLC13 family permease [Candidatus Hydrogenedentota bacterium] diamond 483 55.8 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;