RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1020854", tax_phylum = "Thermodesulfobacteriota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 6 ✖

tax_phylum 1

  • Thermodesulfobacteriota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1020854 · 6 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24386934 24386934 PRJNA1020854_S_NODE_21840_length_232_cov_5.995074_g19076_i0 PRJNA1020854 21840 232 5.995074 13.90857168 Bacteria 2 Bacteria Bacteria 137 6.009999999999999e-37   NR MDD2467322.1 895 g19076 i0 81.8 10.9525862068966 77 14 99.6 0 2 232 129 205 MDD2467322.1 UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine transaminase [Desulfobulbus sp.] diamond 2541 137 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae Desulfobulbus Desulfobulbus sp.
27224358 27224358 PRJNA1020854_S_NODE_22903_length_225_cov_3.826531_g20139_i0 PRJNA1020854 22903 225 3.826531 8.60969475 Desulfomicrobium escambiense 29503 Bacteria Bacteria 91.3 1.56e-19   NR WP_028576375.1 29503 g20139 i0 83.3 0.72 54 9 72 0 201 40 273 326 WP_028576375.1 EAL and HDOD domain-containing protein [Desulfomicrobium escambiense] diamond 162 91.3 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfomicrobiaceae Desulfomicrobium Desulfomicrobium escambiense
27311815 27311815 PRJNA1020854_S_NODE_25363_length_210_cov_4.370166_g22599_i0 PRJNA1020854 25363 210 4.370166 9.1773486 Bacteria 2 Bacteria Bacteria 108 7.07e-27   NR WP_235263991.1 392333 g22599 i0 80.6 23.9142857142857 62 12 88.6 0 24 209 74 135 WP_235263991.1 UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine transaminase [Geoalkalibacter ferrihydriticus] diamond 5022 108 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Geoalkalibacteraceae Geoalkalibacter Geoalkalibacter ferrihydriticus
27666923 27666923 PRJNA1020854_S_NODE_32844_length_178_cov_3.100671_g30080_i0 PRJNA1020854 32844 178 3.100671 5.51919438 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 53.1 3.18e-6   NR MEN8134060.1 2202153 g30080 i0 46.8 0.792134831460674 47 25 79.2 0 18 158 192 238 MEN8134060.1 sugar nucleotide-binding protein [Thermodesulfobacteriota bacterium] diamond 141 53.1 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
29561050 29561050 PRJNA1020854_S_NODE_32710_length_178_cov_31.449664_g29946_i0 PRJNA1020854 32710 178 31.449664 55.98040192 Desulfovibrionales bacterium 2448050 Bacteria Bacteria 60.8 6.04e-9   NR NLY41234.1 2448050 g29946 i0 58.7 0.775280898876405 46 19 77.5 0 3 140 335 380 NLY41234.1 HDOD domain-containing protein [Desulfovibrionales bacterium] diamond 138 60.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales     Desulfovibrionales bacterium
30951351 30951351 PRJNA1020854_S_NODE_23354_length_222_cov_5.901554_g20590_i0 PRJNA1020854 23354 222 5.901554 13.10144988 Desulfobulbus sp. 895 Bacteria Bacteria 115 8.03e-29   NR MDD2467322.1 895 g20590 i0 78.8 2.68918918918919 66 14 89.2 0 3 200 198 263 MDD2467322.1 UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine transaminase [Desulfobulbus sp.] diamond 597 115 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae Desulfobulbus Desulfobulbus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;