RNAquarium Metadata Server
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contig_metadata

11 rows where bioproject = "PRJNA1020854", tax_kingdom = "Pseudomonadati" and tax_phylum = "Myxococcota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 11 ✖

tax_kingdom 1

  • Pseudomonadati · 11 ✖

bioproject 1

  • PRJNA1020854 · 11 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3987986 3987986 PRJNA1020854_S_NODE_9184_length_445_cov_45.713942_g6478_i0 PRJNA1020854 9184 445 45.713942 203.4270419 Pendulispora brunnea 2905690 Bacteria Bacteria 512 1.64e-140   NTclustered gi|2698055994|gb|CP089982.1| 2905690 g6478 i0 93.143 703.737078651685 350 22 78 2 98 445 7408058 7408407 Pendulispora brunnea strain MSr12523 chromosome, complete genome blastn 313163 512 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora brunnea
6106346 6106346 PRJNA1020854_S_NODE_16985_length_276_cov_1267.740891_g14221_i0 PRJNA1020854 16985 276 1267.740891 3498.96485916 Myxococcales bacterium 2026763 Bacteria Bacteria 84 1.81e-16   NR MFT3928156.1 2026763 g14221 i0 50 0.978260869565217 90 35 87 2 22 261 118 207 MFT3928156.1 long-chain-acyl-CoA synthetase [Myxococcales bacterium] diamond 270 84 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
10364534 10364534 PRJNA1020854_S_NODE_7629_length_540_cov_365.045010_g5002_i0 PRJNA1020854 7629 540 365.04501 1971.243054 Pendulispora brunnea 2905690 Bacteria Bacteria 516 1.5699999999999998e-141   NTclustered gi|2698055994|gb|CP089982.1| 2905690 g5002 i0 89.877 261.862962962963 405 35 74 5 1 401 7408407 7408005 Pendulispora brunnea strain MSr12523 chromosome, complete genome blastn 141406 516 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora brunnea
21838114 21838114 PRJNA1020854_S_NODE_6158_length_705_cov_778.832840_g3696_i0 PRJNA1020854 6158 705 778.83284 5490.771522 Kofleriaceae bacterium 2212474 Bacteria Bacteria 265 3.11e-86   NR HEY0253327.1 2212474 g3696 i0 99.4 0.757446808510638 178 1 75.7 0 589 56 1 178 HEY0253327.1 hypothetical protein [Kofleriaceae bacterium] diamond 534 265 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
27761735 27761735 PRJNA1020854_S_NODE_14284_length_314_cov_3.077193_g11520_i0 PRJNA1020854 14284 314 3.077193 9.66238602 Pyxidicoccus sp. MSG2 2996790 Bacteria Bacteria 44.3 0.0225   NR WP_267856999.1 2996790 g11520 i0 34.4 0.582802547770701 61 40 58.3 0 269 87 32 92 WP_267856999.1 Virginiamycin B lyase [Pyxidicoccus sp. MSG2] diamond 183 44.3 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Pyxidicoccus Pyxidicoccus sp. MSG2
28456236 28456236 PRJNA1020854_S_NODE_30726_length_186_cov_2.407643_g27962_i0 PRJNA1020854 30726 186 2.407643 4.47821598 Myxococcales bacterium 2026763 Bacteria Bacteria 57.4 1.24e-7   NR HIA01140.1 2026763 g27962 i0 54.9 0.82258064516129 51 22 82.3 1 19 171 679 728 HIA01140.1 hypothetical protein [Myxococcales bacterium] diamond 153 57.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
29434573 29434573 PRJNA1020854_S_NODE_39850_length_158_cov_2.279070_g37086_i0 PRJNA1020854 39850 158 2.27907 3.6009306 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 41.2 0.0409   NR TDJ16765.1 2026735 g37086 i0 48.6 0.70253164556962 37 19 70.3 0 113 3 147 183 TDJ16765.1 MAG: FkbM family methyltransferase [Deltaproteobacteria bacterium] diamond 111 41.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
29813666 29813666 PRJNA1020854_S_NODE_19111_length_254_cov_6.071111_g16347_i0 PRJNA1020854 19111 254 6.071111 15.42062194 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 43.9 0.0171   NR TNF32024.1 2026735 g16347 i0 37.5 0.566929133858268 48 30 56.7 0 92 235 721 768 TNF32024.1 MAG: hypothetical protein EP329_11385 [Deltaproteobacteria bacterium] diamond 144 43.9 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
30603502 30603502 PRJNA1020854_S_NODE_15133_length_301_cov_3.952206_g12369_i0 PRJNA1020854 15133 301 3.952206 11.89614006 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 55.1 2.25e-6   NR MCK4846512.1 2026735 g12369 i0 50.8 0.588039867109635 59 25 54.8 2 3 167 190 248 MCK4846512.1 ZIP family metal transporter [Deltaproteobacteria bacterium] diamond 177 55.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
31425275 31425275 PRJNA1020854_S_NODE_17116_length_275_cov_3.130081_g14352_i0 PRJNA1020854 17116 275 3.130081 8.60772275 Myxococcales bacterium 2026763 Bacteria Bacteria 50.1 1.41e-4   NR MCB9524676.1 2026763 g14352 i0 65.8 0.829090909090909 38 12 40.4 1 173 63 304 341 MCB9524676.1 hypothetical protein [Myxococcales bacterium] diamond 228 50.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
32113589 32113589 PRJNA1020854_S_NODE_32578_length_179_cov_2.900000_g29814_i0 PRJNA1020854 32578 179 2.9 5.191 Pseudomonadati 3379134 Bacteria Bacteria 48.5 1.37e-4   NR NOY89703.1 2026735 g29814 i0 40.7 5.14525139664805 59 35 98.9 0 1 177 195 253 NOY89703.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH [Deltaproteobacteria bacterium] diamond 921 48.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;