RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

22 rows where bioproject = "PRJNA1020854", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 22 ✖

tax_kingdom 1

  • Pseudomonadati · 22 ✖

bioproject 1

  • PRJNA1020854 · 22 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6538898 6538898 PRJNA1020854_S_NODE_13646_length_324_cov_16.847458_g10882_i0 PRJNA1020854 13646 324 16.847458 54.58576392 Peredibacter sp. HCB2-198 3383025 Bacteria Bacteria 427 4.33e-115   NTclustered gi|2867657404|gb|CP174607.1| 3383025 g10882 i0 90.432 211.296296296296 324 31 100 0 1 324 1292764 1292441 Peredibacter sp. HCB2-198 chromosome, complete genome blastn 68460 427 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter sp. HCB2-198
7381091 7381091 PRJNA1020854_S_NODE_42386_length_152_cov_3.300813_g39622_i0 PRJNA1020854 42386 152 3.300813 5.01723576 Bacteriovorax 146784 Bacteria Bacteria 220 3.22e-53   NTclustered gi|1700689994|gb|CP030035.1| 960 g39622 i0 92.81 11.4210526315789 153 10 100 1 1 152 1661722 1661874 Bacteriovorax stolpii strain AC01 chromosome, complete genome blastn 1736 220 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii
11206432 11206432 PRJNA1020854_S_NODE_17409_length_271_cov_10.400826_g14645_i0 PRJNA1020854 17409 271 10.400826 28.18623846 Bacteriovorax 146784 Bacteria Bacteria 320 6.17e-83   NTclustered gi|1700689994|gb|CP030035.1| 960 g14645 i0 88.192 268.317343173432 271 29 99 3 3 271 1660852 1660583 Bacteriovorax stolpii strain AC01 chromosome, complete genome blastn 72714 320 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii
12915080 12915080 PRJNA1020854_S_NODE_8471_length_482_cov_1108.328918_g5795_i0 PRJNA1020854 8471 482 1108.328918 5342.14538476 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 99.8 1.7700000000000003e-21   NR HEY8278957.1 3034175 g5795 i0 58.9 0.560165975103734 90 37 56 0 164 433 1 90 HEY8278957.1 flagellar hook capping FlgD N-terminal domain-containing protein [Bdellovibrionota bacterium] diamond 270 99.8 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
15463466 15463466 PRJNA1020854_S_NODE_16173_length_287_cov_3.697674_g13409_i0 PRJNA1020854 16173 287 3.697674 10.61232438 Micavibrio aeruginosavorus 349221 Bacteria Bacteria 470 6.18e-128   NTclustered gi|469926873|gb|CP003538.1| 349215 g13409 i0 96.167 2 287 11 100 0 1 287 537635 537921 Micavibrio aeruginosavorus EPB, complete genome blastn 574 470 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus
25229306 25229306 PRJNA1020854_S_NODE_13940_length_319_cov_1075.093103_g11176_i0 PRJNA1020854 13940 319 1075.093103 3429.54699857 Bacteriovorax 146784 Bacteria Bacteria 399 9.269999999999998e-107   NTclustered gi|1700689994|gb|CP030035.1| 960 g11176 i0 93.939 251.736677115987 264 16 83 0 56 319 1660347 1660610 Bacteriovorax stolpii strain AC01 chromosome, complete genome blastn 80304 399 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii
27446013 27446013 PRJNA1020854_S_NODE_36303_length_167_cov_3.318841_g33539_i0 PRJNA1020854 36303 167 3.318841 5.54246447 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 56.6 1.67e-7   NR HEY8278958.1 3034175 g33539 i0 65.5 0.988023952095808 55 17 95.2 2 9 167 119 173 HEY8278958.1 flagellar hook-length control protein FliK [Bdellovibrionota bacterium] diamond 165 56.6 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
28424644 28424644 PRJNA1020854_S_NODE_34706_length_172_cov_2.342657_g31942_i0 PRJNA1020854 34706 172 2.342657 4.02937004 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 127 3.33e-33   NR HEY8280555.1 3034175 g31942 i0 94.7 0.994186046511628 57 3 99.4 0 2 172 334 390 HEY8280555.1 asparagine--tRNA ligase [Bdellovibrionota bacterium] diamond 171 127 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
29466076 29466076 PRJNA1020854_S_NODE_33190_length_177_cov_2.500000_g30426_i0 PRJNA1020854 33190 177 2.5 4.425 Micavibrio aeruginosavorus 349221 Bacteria Bacteria 79.3 1.89e-15   NR PZP56634.1 349221 g30426 i0 68 0.847457627118644 50 16 84.7 0 5 154 220 269 PZP56634.1 MAG: hypothetical protein DI586_02940 [Micavibrio aeruginosavorus] diamond 150 79.3 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus
29718805 29718805 PRJNA1020854_S_NODE_32310_length_180_cov_2.596026_g29546_i0 PRJNA1020854 32310 180 2.596026 4.6728468 Bdellovibrio sp. 28201 Bacteria Bacteria 68.6 1.24e-11   NR HWU42144.1 28201 g29546 i0 88.9 0.6 36 4 60 0 71 178 453 488 HWU42144.1 reverse transcriptase family protein [Bdellovibrio sp.] diamond 108 68.6 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp.
29782195 29782195 PRJNA1020854_S_NODE_7771_length_530_cov_4.079840_g5129_i0 PRJNA1020854 7771 530 4.07984 21.623152 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 115 3.24e-28   NR MEW6057922.1 3034175 g5129 i0 44.2 0.832075471698113 147 81 83.2 1 506 66 79 224 MEW6057922.1 response regulator [Bdellovibrionota bacterium] diamond 441 115 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
29813677 29813677 PRJNA1020854_S_NODE_37431_length_164_cov_2.800000_g34667_i0 PRJNA1020854 37431 164 2.8 4.592 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 45.4 0.00135   NR MBS1958356.1 2053517 g34667 i0 52.2 0.841463414634146 46 22 84.1 0 164 27 50 95 MBS1958356.1 TIGR02147 family protein [Bdellovibrionales bacterium] diamond 138 45.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
29877061 29877061 PRJNA1020854_S_NODE_32271_length_180_cov_3.026490_g29507_i0 PRJNA1020854 32271 180 3.02649 5.447682 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 61.6 2.33e-9   NR MCK5072915.1 2081706 g29507 i0 48.2 1.85 56 29 93.3 0 6 173 4 59 MCK5072915.1 TIGR02147 family protein [Bacteriovoracaceae bacterium] diamond 333 61.6 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
29971683 29971683 PRJNA1020854_S_NODE_11391_length_373_cov_3.488372_g8637_i0 PRJNA1020854 11391 373 3.488372 13.01162756 Oligoflexia bacterium 2599941 Bacteria Bacteria 172 1.13e-51   NR MDR3607798.1 2599941 g8637 i0 71.6 0.932975871313673 116 33 93.3 0 372 25 98 213 MDR3607798.1 carbonic anhydrase [Oligoflexia bacterium] diamond 348 172 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia       Oligoflexia bacterium
30445791 30445791 PRJNA1020854_S_NODE_10413_length_401_cov_3.516129_g7673_i0 PRJNA1020854 10413 401 3.516129 14.09967729 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 66.2 1e-9   NR MBX3020050.1 2053517 g7673 i0 45.1 0.531172069825436 71 39 53.1 0 151 363 3 73 MBX3020050.1 hypothetical protein [Bdellovibrionales bacterium] diamond 213 66.2 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
30603505 30603505 PRJNA1020854_S_NODE_20333_length_244_cov_3.306977_g17569_i0 PRJNA1020854 20333 244 3.306977 8.06902388 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 73.2 7.26e-13   NR HEY8279616.1 3034175 g17569 i0 79.1 0.528688524590164 43 9 52.9 0 243 115 667 709 HEY8279616.1 GGDEF domain-containing protein [Bdellovibrionota bacterium] diamond 129 73.2 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
30824735 30824735 PRJNA1020854_S_NODE_12354_length_350_cov_3.376947_g9591_i0 PRJNA1020854 12354 350 3.376947 11.8193145 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 108 1.96e-25   NR MBA2404814.1 2053517 g9591 i0 46.2 1.00285714285714 117 62 99.4 1 348 1 81 197 MBA2404814.1 hypothetical protein [Bdellovibrionales bacterium] diamond 351 108 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
31393875 31393875 PRJNA1020854_S_NODE_13856_length_321_cov_3.931507_g11092_i0 PRJNA1020854 13856 321 3.931507 12.62013747 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 159 1.95e-44   NR HEY8278958.1 3034175 g11092 i0 80 0.981308411214953 105 20 98.1 1 3 317 282 385 HEY8278958.1 flagellar hook-length control protein FliK [Bdellovibrionota bacterium] diamond 315 159 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
31773169 31773169 PRJNA1020854_S_NODE_36697_length_166_cov_2.948905_g33933_i0 PRJNA1020854 36697 166 2.948905 4.8951823 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 62 2.1e-9   NR HEY8280482.1 3034175 g33933 i0 52.7 0.993975903614458 55 26 99.4 0 1 165 238 292 HEY8280482.1 ATP-binding protein [Bdellovibrionota bacterium] diamond 165 62 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
32121483 32121483 PRJNA1020854_S_NODE_35698_length_169_cov_2.521429_g32934_i0 PRJNA1020854 35698 169 2.521429 4.26121501 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 65.1 1.8e-10   NR HEY8280482.1 3034175 g32934 i0 58.9 0.994082840236686 56 23 99.4 0 1 168 191 246 HEY8280482.1 ATP-binding protein [Bdellovibrionota bacterium] diamond 168 65.1 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
32753201 32753201 PRJNA1020854_S_NODE_7980_length_513_cov_6.526860_g5329_i0 PRJNA1020854 7980 513 6.52686 33.4827918 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 45.8 0.0335   NR MFT6071456.1 2081706 g5329 i0 21.3 0.988304093567251 169 133 98.8 0 509 3 145 313 MFT6071456.1 hypothetical protein [Bacteriovoracaceae bacterium] diamond 507 45.8 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
32784556 32784556 PRJNA1020854_S_NODE_25040_length_212_cov_3.524590_g22276_i0 PRJNA1020854 25040 212 3.52459 7.4721308 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 63.5 8.97e-10   NR HEY8280188.1 3034175 g22276 i0 68.9 0.636792452830189 45 14 63.7 0 77 211 1 45 HEY8280188.1 NADH-quinone oxidoreductase subunit H [Bdellovibrionota bacterium] diamond 135 63.5 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;