RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1020854", tax_kingdom = "Pararnavirae" and tax_superkingdom = "Viruses"

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analysis 2

tax_superkingdom 1

  • Viruses · 6 ✖

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 6 ✖

bioproject 1

  • PRJNA1020854 · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13756609 13756609 PRJNA1020854_S_NODE_20291_length_244_cov_5.241860_g17527_i0 PRJNA1020854 20291 244 5.24186 12.7901384 root 1 Root_unresolved Root_unresolved 451 1.86e-122   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g17527 i0 100 99.9918032786885 244 0 100 0 1 244 2945 2702 Moloney murine leukemia virus, complete genome blastn 24398 451 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
19286266 19286266 PRJNA1020854_S_NODE_10076_length_411_cov_1463.175393_g7341_i0 PRJNA1020854 10076 411 1463.175393 6013.65086523 Gammaretrovirus 153135 Viruses Viruses 201 8.209999999999999e-57   NR ABU54795.1 11786 g7341 i0 94.3 6.89051094890511 105 3 76.6 1 344 30 657 758 ABU54795.1 gag-pro-pol polyprotein [Murine leukemia virus] diamond 2832 203 0.990147783251232 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
20129723 20129723 PRJNA1020854_S_NODE_28616_length_194_cov_39.224242_g25852_i0 PRJNA1020854 28616 194 39.224242 76.09502948 root 1 Root_unresolved Root_unresolved 235 1.55e-57   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g25852 i0 100 65.4639175257732 127 0 65 0 1 127 2722 2596 Moloney murine leukemia virus, complete genome blastn 12700 235 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
28108615 28108615 PRJNA1020854_S_NODE_8685_length_470_cov_5.705215_g6000_i0 PRJNA1020854 8685 470 5.705215 26.8145105 Moloney murine leukemia virus 11801 Viruses Viruses 303 5.23e-92   NR NP_057933.2 11801 g6000 i0 100 8.55957446808511 149 0 95.1 0 23 469 811 959 NP_057933.2 Pr180 [Moloney murine leukemia virus] diamond 4023 303 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
30540401 30540401 PRJNA1020854_S_NODE_19233_length_253_cov_7.183036_g16469_i0 PRJNA1020854 19233 253 7.183036 18.17308108 Moloney murine leukemia virus 11801 Viruses Viruses 159 3.4099999999999998e-43   NR NP_057933.2 11801 g16469 i0 98.7 1.82608695652174 77 1 91.3 0 252 22 1129 1205 NP_057933.2 Pr180 [Moloney murine leukemia virus] diamond 462 159 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
32721714 32721714 PRJNA1020854_S_NODE_9580_length_429_cov_68.290000_g6861_i0 PRJNA1020854 9580 429 68.29 292.9641 Moloney murine leukemia virus 11801 Viruses Viruses 246 1.86e-72   NR NP_057933.2 11801 g6861 i0 95.5 0.923076923076923 132 6 92.3 0 26 421 1207 1338 NP_057933.2 Pr180 [Moloney murine leukemia virus] diamond 396 246 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;