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contig_metadata

4 rows where bioproject = "PRJNA1020854" and tax_clade = "delta/epsilon subdivisions"

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analysis 2

tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 4 ✖

bioproject 1

  • PRJNA1020854 · 4 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2711048 2711048 PRJNA1020854_S_NODE_14423_length_311_cov_1852.230496_g11659_i0 PRJNA1020854 14423 311 1852.230496 5760.43684256 uncultured delta proteobacterium 34034 Bacteria Bacteria 134 1.01e-26   NTclustered gi|2874254016|emb|OY970341.1| 34034 g11659 i0 81.657 200.508038585209 169 24 53 7 3 167 592921 592756 MAG: uncultured delta proteobacterium isolate MFD01231.bin.c.2 genome assembly, chromosome: 1 blastn 62358 134 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
3553924 3553924 PRJNA1020854_S_NODE_36283_length_167_cov_3.623188_g33519_i0 PRJNA1020854 36283 167 3.623188 6.05072396 delta/epsilon subdivisions 68525 Bacteria Bacteria 309 7.53e-80   NTclustered gi|1139283245|emb|LT697265.1| 34034 g33519 i0 100 99.2095808383233 167 0 100 0 1 167 330 496 uncultured delta proteobacterium partial 16S rRNA gene, isolate 10T_22683 blastn 16568 309 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
6106296 6106296 PRJNA1020854_S_NODE_13585_length_325_cov_82.175676_g10821_i0 PRJNA1020854 13585 325 82.175676 267.070947 root 1 Root_unresolved Root_unresolved 507 5.42e-139   NTclustered gi|1139283245|emb|LT697265.1| 34034 g10821 i0 94.785 99.7938461538461 326 16 100 1 1 325 338 13 uncultured delta proteobacterium partial 16S rRNA gene, isolate 10T_22683 blastn 32433 507 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
26845264 26845264 PRJNA1020854_S_NODE_42001_length_153_cov_2.733871_g39237_i0 PRJNA1020854 42001 153 2.733871 4.18282263 Deltaproteobacteria bacterium RIFCSPLOWO2_ 2026735 Bacteria Bacteria 75.1 3.27e-14   NR OGQ60229.1 1797882 g39237 i0 71.7 4.50980392156863 46 13 90.2 0 6 143 156 201 OGQ60229.1 MAG: hypothetical protein A3J24_09960 [Deltaproteobacteria bacterium RIFCSPLOWO2_02_FULL_53_8] diamond 690 75.1 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RIFCSPLOWO2_02_FULL_53_8

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;