RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1020854", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 4 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA1020854 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18012649 18012649 PRJNA1020854_S_NODE_22495_length_228_cov_2.251256_g19731_i0 PRJNA1020854 22495 228 2.251256 5.13286368 Rhabdochlamydiaceae bacterium 2047756 Bacteria Bacteria 58.9 4.38e-8   NR HSW85978.1 2047756 g19731 i0 74.2 0.407894736842105 31 8 40.8 0 135 227 1 31 HSW85978.1 hypothetical protein [Rhabdochlamydiaceae bacterium] diamond 93 58.9 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae   Rhabdochlamydiaceae bacterium
21837446 21837446 PRJNA1020854_S_NODE_11078_length_381_cov_1469.471591_g8326_i0 PRJNA1020854 11078 381 1469.471591 5598.68676171 Chlamydiia 204429 Bacteria Bacteria 159 3.9499999999999986e-43   NR MBX9922555.1 2047756 g8326 i0 75.2 3.44094488188976 109 27 85.8 0 54 380 406 514 MBX9922555.1 ABC transporter ATP-binding protein/permease [Rhabdochlamydiaceae bacterium] diamond 1311 159 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae   Rhabdochlamydiaceae bacterium
30382864 30382864 PRJNA1020854_S_NODE_38113_length_162_cov_3.315789_g35349_i0 PRJNA1020854 38113 162 3.315789 5.37157818 Chlamydiota bacterium 2081524 Bacteria Bacteria 67 1.78e-12   NR NGX61954.1 2081524 g35349 i0 60.4 0.981481481481482 53 21 98.1 0 1 159 65 117 NGX61954.1 hypothetical protein [Chlamydiota bacterium] diamond 159 67 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiota bacterium
32682241 32682241 PRJNA1020854_S_NODE_9780_length_422_cov_3.732824_g7051_i0 PRJNA1020854 9780 422 3.732824 15.75251728 Chlamydiia 204429 Bacteria Bacteria 122 6.609999999999999e-31   NR MBS3903719.1 34094 g7051 i0 69.2 11.0829383886256 78 24 55.5 0 3 236 91 168 MBS3903719.1 DUF692 domain-containing protein [Simkania sp.] diamond 4677 122 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Simkaniaceae Simkania Simkania sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;