RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1020854", tax_clade = "Opisthokonta" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 2 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 2 ✖

bioproject 1

  • PRJNA1020854 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2711576 2711576 PRJNA1020854_S_NODE_42383_length_152_cov_3.300813_g39619_i0 PRJNA1020854 42383 152 3.300813 5.01723576 Ruditapes philippinarum 129788 Mollusca Mollusca 52.8 0.012   NTclustered gi|2616644776|ref|XM_060741328.1| 129788 g39619 i0 100 0.184210526315789 28 0 18 0 51 78 739 712 PREDICTED: Ruditapes philippinarum anaphase-promoting complex subunit 13-like (LOC132751190), mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Venerida Veneridae Ruditapes Ruditapes philippinarum
7813761 7813761 PRJNA1020854_S_NODE_38527_length_161_cov_2.977273_g35763_i0 PRJNA1020854 38527 161 2.977273 4.79340953 Bradybaena similaris 145626 Mollusca Mollusca 54.7 0.004   NTclustered gi|2912985489|dbj|AP039590.1| 145626 g35763 i0 100 0.180124223602484 29 0 18 0 19 47 69565718 69565690 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 9, sequence blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;