RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1020854", tax_clade = "FCB group" and tax_phylum = "Rhodothermota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 6 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 6 ✖

bioproject 1

  • PRJNA1020854 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
160664 160664 PRJNA1020854_S_NODE_15421_length_296_cov_1921.239700_g12657_i0 PRJNA1020854 15421 296 1921.2397 5686.869512 Rubrivirga sp. IMCC45206 3391614 Bacteria Bacteria 257 5.43e-64   NTclustered gi|2890849321|gb|CP177357.1| 3391614 g12657 i0 86.192 226.570945945946 239 31 80 2 59 296 3830244 3830481 Rubrivirga sp. IMCC45206 chromosome, complete genome blastn 67065 257 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. IMCC45206
18012526 18012526 PRJNA1020854_S_NODE_16215_length_286_cov_19.618677_g13451_i0 PRJNA1020854 16215 286 19.618677 56.10941622 Rubricoccaceae bacterium 2838334 Bacteria Bacteria 481 2.84e-131   NTclustered gi|2874254104|emb|OY970187.1| 2838334 g13451 i0 97.509 273.681818181818 281 7 98 0 1 281 1308598 1308318 MAG: Rubricoccaceae bacterium isolate MFD03250.bin.2.52 genome assembly, chromosome: 1 blastn 78273 481 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium
19286396 19286396 PRJNA1020854_S_NODE_15436_length_296_cov_19.419476_g12672_i0 PRJNA1020854 15436 296 19.419476 57.48164896 Rubricoccaceae bacterium 2838334 Bacteria Bacteria 357 5.2e-94   NTclustered gi|2874254104|emb|OY970187.1| 2838334 g12672 i0 88.776 228.179054054054 294 29 99 4 4 295 1309208 1308917 MAG: Rubricoccaceae bacterium isolate MFD03250.bin.2.52 genome assembly, chromosome: 1 blastn 67541 357 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium
19287018 19287018 PRJNA1020854_S_NODE_7156_length_580_cov_574.488203_g4563_i0 PRJNA1020854 7156 580 574.488203 3332.0315774 Rubrivirga sp. IMCC43871 3391575 Bacteria Bacteria 649 0   NTclustered gi|2890853429|gb|CP177355.1| 3391575 g4563 i0 88.806 320.012068965517 536 51 91 9 3 532 806466 806998 Rubrivirga sp. IMCC43871 chromosome, complete genome blastn 185607 649 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. IMCC43871
29623819 29623819 PRJNA1020854_S_NODE_10050_length_412_cov_18.268930_g7315_i0 PRJNA1020854 10050 412 18.26893 75.2679916 Rhodothermales bacterium 2306054 Bacteria Bacteria 78.2 9.99e-14   NR HLA63603.1 2306054 g7315 i0 35.1 3.56796116504854 131 75 88.1 3 47 409 110 240 HLA63603.1 PhoH family protein [Rhodothermales bacterium] diamond 1470 78.2 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales     Rhodothermales bacterium
30824737 30824737 PRJNA1020854_S_NODE_18734_length_258_cov_2.912664_g15970_i0 PRJNA1020854 18734 258 2.912664 7.51467312 Salinibacter ruber 146919 Bacteria Bacteria 53.9 5.51e-6   NR WP_259124349.1 146919 g15970 i0 55 1.38372093023256 40 17 46.5 1 159 40 850 888 WP_259124349.1 PKD domain-containing protein [Salinibacter ruber] diamond 357 53.9 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Salinibacteraceae Salinibacter Salinibacter ruber

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;