RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1020854", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA1020854 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9088615 9088615 PRJNA1020854_S_NODE_32268_length_180_cov_3.046358_g29504_i0 PRJNA1020854 32268 180 3.046358 5.4834444 Gemmatimonas phototrophica 1379270 Bacteria Bacteria 207 3.08e-49   NTclustered gi|1015602748|gb|CP011454.1| 1379270 g29504 i0 87.709 12.0222222222222 179 21 99 1 2 180 2076054 2075877 Gemmatimonas phototrophica strain AP64, complete genome blastn 2164 207 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas phototrophica
26741810 26741810 PRJNA1020854_S_NODE_22941_length_225_cov_2.984694_g20177_i0 PRJNA1020854 22941 225 2.984694 6.7155615 Bacteria 2 Bacteria Bacteria 73.6 3.97e-13   NR MEO8200246.1 2026742 g20177 i0 79.5 5 44 9 58.7 0 8 139 161 204 MEO8200246.1 LysM peptidoglycan-binding domain-containing protein [Gemmatimonadota bacterium] diamond 1125 73.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
29782190 29782190 PRJNA1020854_S_NODE_41891_length_153_cov_3.653226_g39127_i0 PRJNA1020854 41891 153 3.653226 5.58943578 Longimicrobiaceae bacterium 3047548 Bacteria Bacteria 88.6 8.6e-20   NR HET6232712.1 3047548 g39127 i0 71.4 0.96078431372549 49 14 96.1 0 152 6 140 188 HET6232712.1 class I SAM-dependent methyltransferase [Longimicrobiaceae bacterium] diamond 147 88.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae   Longimicrobiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;