RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA1020854", tax_clade = "FCB group" and tax_phylum = "Chlorobiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 5 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 5 ✖

bioproject 1

  • PRJNA1020854 · 5 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3553670 3553670 PRJNA1020854_S_NODE_15863_length_290_cov_6765.034483_g13099_i0 PRJNA1020854 15863 290 6765.034483 19618.6000007 Chlorobi bacterium NICIL-2 1662223 Bacteria Bacteria 161 1.6399999999999996e-43   NR KXB97457.1 1662223 g13099 i0 95.2 0.858620689655172 83 4 85.9 0 290 42 312 394 KXB97457.1 MAG: hypothetical protein AA908_06250 [Chlorobi bacterium NICIL-2] diamond 249 161 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobi bacterium NICIL-2
24386873 24386873 PRJNA1020854_S_NODE_18140_length_264_cov_3.038298_g15376_i0 PRJNA1020854 18140 264 3.038298 8.02110672 Pseudomonadati 3379134 Bacteria Bacteria 170 8.889999999999999e-47   NR KXB97457.1 1662223 g15376 i0 100 5.52272727272727 81 0 92 0 245 3 177 257 KXB97457.1 MAG: hypothetical protein AA908_06250 [Chlorobi bacterium NICIL-2] diamond 1458 170 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobi bacterium NICIL-2
27856124 27856124 PRJNA1020854_S_NODE_37065_length_165_cov_2.882353_g34301_i0 PRJNA1020854 37065 165 2.882353 4.75588245 Chlorobi bacterium NICIL-2 1662223 Bacteria Bacteria 116 1.33e-29   NR KXB97375.1 1662223 g34301 i0 98.1 0.981818181818182 54 1 98.2 0 2 163 202 255 KXB97375.1 MAG: hypothetical protein AA908_06845 [Chlorobi bacterium NICIL-2] diamond 162 116 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobi bacterium NICIL-2
30224390 30224390 PRJNA1020854_S_NODE_28532_length_195_cov_2.692771_g25768_i0 PRJNA1020854 28532 195 2.692771 5.25090345 Chlorobi bacterium NICIL-2 1662223 Bacteria Bacteria 116 1.9699999999999999e-28   NR KXB97540.1 1662223 g25768 i0 96.9 0.984615384615385 64 2 98.5 0 4 195 1427 1490 KXB97540.1 MAG: hypothetical protein AA908_06695 [Chlorobi bacterium NICIL-2] diamond 192 116 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobi bacterium NICIL-2
31140325 31140325 PRJNA1020854_S_NODE_25575_length_209_cov_4.022222_g22811_i0 PRJNA1020854 25575 209 4.022222 8.40644398 Chlorobi bacterium NICIL-2 1662223 Bacteria Bacteria 135 4.159999999999999e-35   NR KXB97457.1 1662223 g22811 i0 100 0.990430622009569 69 0 99 0 207 1 252 320 KXB97457.1 MAG: hypothetical protein AA908_06250 [Chlorobi bacterium NICIL-2] diamond 207 135 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobi bacterium NICIL-2

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;