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contig_metadata

29 rows where bioproject = "PRJNA1020641" and tax_phylum = "Streptophyta"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Streptophyta · 29 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1020641 · 29 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1003055 1003055 PRJNA1020641_P_NODE_6741_length_245_cov_0.895349_g6698_i0 PRJNA1020641 6741 245 0.895349 2.19360505 Oryza 4527 Plants Plants 453 5.1900000000000006e-123   NTclustered gi|2348205014|ref|XM_052313009.1| 4538 g6698 i0 100 27.3142857142857 245 0 100 0 1 245 532 776 PREDICTED: Oryza glaberrima uncharacterized LOC127785613 (LOC127785613), mRNA blastn 6692 453 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza glaberrima
1435385 1435385 PRJNA1020641_P_NODE_5502_length_251_cov_0.865169_g5459_i0 PRJNA1020641 5502 251 0.865169 2.17157419 Oryza sativa 4530 Plants Plants 464 2.47e-126   NTclustered gi|2668294535|dbj|AP027390.1| 1771142 g5459 i0 100 6 251 0 100 0 1 251 31063619 31063369 Oryza sativa indica subgroup Inn Ma Yebaw DNA, chromosome: 6 blastn 1506 464 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
1435392 1435392 PRJNA1020641_P_NODE_6002_length_249_cov_0.875000_g5959_i0 PRJNA1020641 6002 249 0.875 2.17875 Capsicum annuum 4072 Plants Plants 58.4 4.84e-4   NTclustered gi|2217078712|ref|XM_016716601.2| 4072 g5959 i0 100 0.373493975903614 31 0 12 0 166 196 1409 1439 PREDICTED: Capsicum annuum uncharacterized LOC107870170 (LOC107870170), transcript variant X3, mRNA blastn 93 58.4 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Capsicum Capsicum annuum
1435393 1435393 PRJNA1020641_P_NODE_7062_length_243_cov_0.905882_g7019_i0 PRJNA1020641 7062 243 0.905882 2.20129326 Andrographis paniculata 175694 Plants Plants 449 6.65e-122   NTclustered gi|2320621615|ref|XM_051258449.1| 175694 g7019 i0 100 2 243 0 100 0 1 243 1497 1739 PREDICTED: Andrographis paniculata uncharacterized LOC127240034 (LOC127240034), transcript variant X2, mRNA blastn 486 449 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Lamiales Acanthaceae Andrographis Andrographis paniculata
2278108 2278108 PRJNA1020641_P_NODE_3902_length_309_cov_0.927966_g3859_i0 PRJNA1020641 3902 309 0.927966 2.86741494 Oryza 4527 Plants Plants 566 8.33e-157   NTclustered gi|2348144976|ref|XM_052293623.1| 4538 g3859 i0 99.676 41.6310679611651 309 1 100 0 1 309 3095 3403 PREDICTED: Oryza glaberrima magnesium-chelatase subunit ChlH, chloroplastic (LOC127768100), mRNA blastn 12864 571 0.991243432574431 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza glaberrima
2278159 2278159 PRJNA1020641_P_NODE_6582_length_246_cov_0.861272_g6539_i0 PRJNA1020641 6582 246 0.861272 2.11872912 Oryza 4527 Plants Plants 455 1.4500000000000002e-123   NTclustered gi|150171247|emb|CU405676.1| 4529 g6539 i0 100 17.3089430894309 246 0 100 0 1 246 28 273 Oryza rufipogon (W1943) cDNA clone: ORW1943C006O06, full insert sequence blastn 4258 455 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza rufipogon
2278165 2278165 PRJNA1020641_P_NODE_7022_length_243_cov_0.905882_g6979_i0 PRJNA1020641 7022 243 0.905882 2.20129326 Solanum 4107 Plants Plants 449 6.65e-122   NTclustered gi|2276479174|ref|XM_049520695.1| 172797 g6979 i0 100 85.3991769547325 243 0 100 0 1 243 1697 1939 PREDICTED: Solanum stenotomum uncharacterized LOC125841537 (LOC125841537), transcript variant X4, mRNA blastn 20752 449 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Solanum Solanum stenotomum
2710940 2710940 PRJNA1020641_P_NODE_6023_length_249_cov_0.875000_g5980_i0 PRJNA1020641 6023 249 0.875 2.17875 Oryza sativa 4530 Plants Plants 449 6.840000000000001e-122   NTclustered gi|2219518193|ref|NM_001404018.1| 39947 g5980 i0 99.2 12.0522088353414 250 1 100 1 1 249 547 298 Oryza sativa Japonica Group 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4-like (LOC4348647), mRNA blastn 3001 449 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
2710941 2710941 PRJNA1020641_P_NODE_6103_length_248_cov_0.880000_g6060_i0 PRJNA1020641 6103 248 0.88 2.1824 Zea mays 4577 Plants Plants 459 1.13e-124   NTclustered gi|14304|emb|X13704.1| 4577 g6060 i0 100 1.63709677419355 248 0 100 0 1 248 856 1103 Maize linear plasmid mitDNA for tRNA-Trp, tRNA-Pro and ORF1 blastn 406 459 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Zea Zea mays
4831033 4831033 PRJNA1020641_P_NODE_6724_length_245_cov_0.895349_g6681_i0 PRJNA1020641 6724 245 0.895349 2.19360505 Oryza 4527 Plants Plants 453 5.1900000000000006e-123   NTclustered gi|150171569|emb|CU406006.1| 4529 g6681 i0 100 59.3591836734694 245 0 100 0 1 245 82 326 Oryza rufipogon (W1943) cDNA clone: ORW1943C002G13, full insert sequence blastn 14543 453 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza rufipogon
5263453 5263453 PRJNA1020641_P_NODE_6985_length_243_cov_0.905882_g6942_i0 PRJNA1020641 6985 243 0.905882 2.20129326 Zea mays 4577 Plants Plants 377 3.18e-100   NTclustered gi|1140466762|gb|KX852318.1| 4577 g6942 i0 94.65 104.362139917695 243 13 100 0 1 243 4729 4971 Zea mays clone BAC98E03/100C03 blastn 25360 377 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Zea Zea mays
5263455 5263455 PRJNA1020641_P_NODE_7405_length_241_cov_0.916667_g7362_i0 PRJNA1020641 7405 241 0.916667 2.20916747 Oryza sativa 4530 Plants Plants 446 8.519999999999999e-121   NTclustered gi|32980911|dbj|AK070888.1| 39947 g7362 i0 100 7.48547717842324 241 0 100 0 1 241 2458 2218 Oryza sativa Japonica Group cDNA clone:J023072F08, full insert sequence blastn 1804 446 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
6538799 6538799 PRJNA1020641_P_NODE_6746_length_245_cov_0.895349_g6703_i0 PRJNA1020641 6746 245 0.895349 2.19360505 Oryza glaberrima 4538 Plants Plants 453 5.1900000000000006e-123   NTclustered gi|2348214309|ref|XM_052279922.1| 4538 g6703 i0 100 71.0122448979592 245 0 100 0 1 245 589 345 PREDICTED: Oryza glaberrima chlorophyll a-b binding protein CP26, chloroplastic (LOC127754409), mRNA blastn 17398 453 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza glaberrima
11206204 11206204 PRJNA1020641_P_NODE_2809_length_365_cov_1.520548_g2766_i0 PRJNA1020641 2809 365 1.520548 5.5500002 Oryza 4527 Plants Plants 584 2.759999999999999e-162   NTclustered gi|8918360|dbj|AB034748.1| 4530 g2766 i0 99.08 69.7424657534247 326 1 89 1 1 324 1431 1106 Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform precursor, complete cds blastn 25456 584 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
11639171 11639171 PRJNA1020641_P_NODE_3870_length_310_cov_1.139241_g3827_i0 PRJNA1020641 3870 310 1.139241 3.5316471 Lactuca sativa 4236 Plants Plants 63.9 1.34e-5   NTclustered gi|2416538151|ref|XM_052765110.1| 4236 g3827 i0 91.304 0.148387096774194 46 4 15 0 121 166 205 160 PREDICTED: Lactuca sativa uncharacterized LOC111901968 (LOC111901968), mRNA blastn 46 63.9 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Asterales Asteraceae Lactuca Lactuca sativa
15030749 15030749 PRJNA1020641_P_NODE_7412_length_241_cov_0.916667_g7369_i0 PRJNA1020641 7412 241 0.916667 2.20916747 Oryza 4527 Plants Plants 446 8.519999999999999e-121   NTclustered gi|21952828|dbj|AP003316.4| 39947 g7369 i0 100 7.61410788381743 241 0 100 0 1 241 119916 119676 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0696G06 blastn 1835 446 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
16305470 16305470 PRJNA1020641_P_NODE_6573_length_246_cov_0.890173_g6530_i0 PRJNA1020641 6573 246 0.890173 2.18982558 Oryza 4527 Plants Plants 449 6.74e-122   NTclustered gi|2348127477|ref|XM_052287931.1| 4538 g6530 i0 99.593 74.9105691056911 246 1 100 0 1 246 808 563 PREDICTED: Oryza glaberrima syntaxin-52-like (LOC127763281), mRNA blastn 18428 449 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza glaberrima
18012366 18012366 PRJNA1020641_P_NODE_6075_length_248_cov_0.880000_g6032_i0 PRJNA1020641 6075 248 0.88 2.1824 Malus domestica 3750 Plants Plants 52.8 0.022   NTclustered gi|2810943372|gb|CP168770.1| 3750 g6032 i0 96.875 0.129032258064516 32 0 13 1 55 85 10615450 10615419 Malus domestica cultivar Golden Delicious chromosome 06 blastn 32 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Rosaceae Malus Malus domestica
19286256 19286256 PRJNA1020641_P_NODE_5636_length_251_cov_0.865169_g5593_i0 PRJNA1020641 5636 251 0.865169 2.17157419 Musa acuminata 4641 Plants Plants 56.5 0.002   NTclustered gi|2008843965|emb|HG996466.1| 214687 g5593 i0 100 0.342629482071713 30 0 12 0 220 249 17006250 17006279 Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A01 blastn 86 56.5 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Zingiberales Musaceae Musa Musa acuminata
19286257 19286257 PRJNA1020641_P_NODE_5736_length_250_cov_0.870056_g5693_i0 PRJNA1020641 5736 250 0.870056 2.17514 Trifolium subterraneum 3900 Plants Plants 95.5 1.13e-20   NR GAU52014.1 3900 g5693 i0 65.1 1.992 83 25 99.6 2 249 1 139 217 GAU52014.1 hypothetical protein TSUD_418260, partial [Trifolium subterraneum] diamond 498 95.5 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Trifolium Trifolium subterraneum
20129438 20129438 PRJNA1020641_P_NODE_7456_length_241_cov_0.916667_g7413_i0 PRJNA1020641 7456 241 0.916667 2.20916747 Brassica 3705 Plants Plants 54.7 0.006   NTclustered gi|2258204360|ref|XM_013870944.3| 3708 g7413 i0 100 0.385892116182573 29 0 12 0 198 226 772 800 PREDICTED: Brassica napus DNAJ protein JJJ1 homolog (LOC106430174), mRNA blastn 93 54.7 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Brassicales Brassicaceae Brassica Brassica napus
23112864 23112864 PRJNA1020641_P_NODE_4859_length_272_cov_0.804020_g4816_i0 PRJNA1020641 4859 272 0.80402 2.1869344 Andrographis paniculata 175694 Plants Plants 459 1.2599999999999999e-124   NTclustered gi|2320550982|ref|XR_007838898.1| 175694 g4816 i0 97.059 99.9889705882353 272 8 100 0 1 272 329 58 PREDICTED: Andrographis paniculata 28S ribosomal RNA (LOC127251384), rRNA blastn 27197 459 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Lamiales Acanthaceae Andrographis Andrographis paniculata
24386673 24386673 PRJNA1020641_P_NODE_5620_length_251_cov_0.865169_g5577_i0 PRJNA1020641 5620 251 0.865169 2.17157419 Oryza sativa 4530 Plants Plants 464 2.47e-126   NTclustered gi|2208424290|ref|NM_001402484.1| 39947 g5577 i0 100 23.0557768924303 251 0 100 0 1 251 1329 1079 Oryza sativa Japonica Group Senescence-associated protein OSA15, chloroplastic (LOC4337812), mRNA; nuclear gene for chloroplast product blastn 5787 464 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
25229230 25229230 PRJNA1020641_P_NODE_6840_length_244_cov_0.900585_g6797_i0 PRJNA1020641 6840 244 0.900585 2.1974274 Oryza 4527 Plants Plants 451 1.86e-122   NTclustered gi|2348184150|ref|XM_052306325.1| 4538 g6797 i0 100 30.8770491803279 244 0 100 0 1 244 967 724 PREDICTED: Oryza glaberrima cytochrome b6-f complex iron-sulfur subunit, chloroplastic (LOC127779522), mRNA blastn 7534 451 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza glaberrima
27382654 27382654 PRJNA1020641_P_NODE_6563_length_246_cov_0.890173_g6520_i0 PRJNA1020641 6563 246 0.890173 2.18982558 Vigna mungo 3915 Plants Plants 62 7.97e-10   NR WVZ16020.1 3915 g6520 i0 45.1 2.69512195121951 71 34 82.9 3 204 1 5 73 WVZ16020.1 hypothetical protein V8G54_013586 [Vigna mungo] diamond 663 62 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Vigna Vigna mungo
28582522 28582522 PRJNA1020641_P_NODE_6187_length_248_cov_0.880000_g6144_i0 PRJNA1020641 6187 248 0.88 2.1824 Mangifera indica 29780 Plants Plants 67 1.97e-11   NR XP_044466254.1 29780 g6144 i0 60 6.06048387096774 50 20 60.5 0 154 5 8 57 XP_044466254.1 ras-related protein Rab11D-like isoform X3 [Mangifera indica] diamond 1503 67 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Sapindales Anacardiaceae Mangifera Mangifera indica
31836325 31836325 PRJNA1020641_P_NODE_7357_length_241_cov_0.916667_g7314_i0 PRJNA1020641 7357 241 0.916667 2.20916747 Salvia divinorum 28513 Plants Plants 42.4 0.046   NR KAL1568354.1 28513 g7314 i0 44.7 0.473029045643154 38 20 46.1 1 215 105 104 141 KAL1568354.1 putative carboxylesterase 18 [Salvia divinorum] diamond 114 42.4 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Lamiales Lamiaceae Salvia Salvia divinorum
31955169 31955169 PRJNA1020641_P_NODE_3377_length_333_cov_0.888462_g3334_i0 PRJNA1020641 3377 333 0.888462 2.95857846 Eukaryota 2759 Plants Plants 88.6 2.44e-18   NR KAJ6801984.1 29817 g3334 i0 60 14 65 26 58.6 0 197 3 238 302 KAJ6801984.1 geranylgeranyl transferase type-2 subunit beta 1-like isoform X2 [Iris pallida] diamond 4662 89 0.995505617977528 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Asparagales Iridaceae Iris Iris pallida
32847574 32847574 PRJNA1020641_P_NODE_4980_length_267_cov_1.824742_g4937_i0 PRJNA1020641 4980 267 1.824742 4.87206114 Dorcoceras hygrometricum 472368 Plants Plants 43.5 0.0236   NR KZV31801.1 472368 g4937 i0 34.2 0.853932584269663 76 41 75.3 2 267 67 6 81 KZV31801.1 dystroglycan-like [Dorcoceras hygrometricum] diamond 228 43.5 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Lamiales Gesneriaceae Dorcoceras Dorcoceras hygrometricum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;