RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1020641", tax_phylum = "Cyanobacteriota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

  • Cyanobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1020641 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2710939 2710939 PRJNA1020641_P_NODE_5963_length_249_cov_0.875000_g5920_i0 PRJNA1020641 5963 249 0.875 2.17875 cyanobacterium NIES-2125 2510788 Bacteria Bacteria 377 3.27e-100   NTclustered gi|1566846232|dbj|LC455610.1| 2510788 g5920 i0 94.024 169.401606425703 251 11 100 4 1 249 547 299 Cyanobacterium NIES-2125 gene for 23S ribosomal RNA, partial sequence blastn 42181 377 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota         cyanobacterium NIES-2125
23112861 23112861 PRJNA1020641_P_NODE_2839_length_364_cov_1.003436_g2796_i0 PRJNA1020641 2839 364 1.003436 3.65250704 Synechococcus sp. CBW1107 2789857 Bacteria Bacteria 52.8 0.035   NTclustered gi|2638498304|emb|OY986430.1| 2789857 g2796 i0 100 0.0769230769230769 28 0 8 0 103 130 401398 401425 Synechococcus sp. CBW1107 isolate KAC_114 genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Synechococcales Synechococcaceae Synechococcus Synechococcus sp. CBW1107
31481117 31481117 PRJNA1020641_P_NODE_6956_length_243_cov_8.929412_g6913_i0 PRJNA1020641 6956 243 8.929412 21.69847116 Oscillatoriales 1150 Bacteria Bacteria 45.4 0.00416   NR WP_224413378.1 331517 g6913 i0 45.1 1.25925925925926 51 26 63 1 232 80 23 71 WP_224413378.1 chloride channel protein [Oscillatoria salina] diamond 306 45.4 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Oscillatoriales Oscillatoriaceae Oscillatoria Oscillatoria salina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;