RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1020641", tax_phylum = "Campylobacterota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1020641 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14189210 14189210 PRJNA1020641_P_NODE_7272_length_242_cov_0.911243_g7229_i0 PRJNA1020641 7272 242 0.911243 2.20520806 Campylobacteraceae bacterium 2268179 Bacteria Bacteria 64.7 6.08e-10   NR NVJ52044.1 2268179 g7229 i0 40 3.71900826446281 75 45 93 0 227 3 116 190 NVJ52044.1 metallophosphoesterase [Campylobacteraceae bacterium] diamond 900 64.7 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae   Campylobacteraceae bacterium
20561738 20561738 PRJNA1020641_P_NODE_6797_length_244_cov_0.900585_g6754_i0 PRJNA1020641 6797 244 0.900585 2.1974274 Helicobacter pylori 210 Bacteria Bacteria 52.8 0.022   NTclustered gi|2641533851|gb|CP078169.1| 210 g6754 i0 100 0.114754098360656 28 0 11 0 163 190 784449 784476 Helicobacter pylori strain HpGP-ZAF-006 chromosome, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
27216501 27216501 PRJNA1020641_P_NODE_5462_length_252_cov_1.078212_g5419_i0 PRJNA1020641 5462 252 1.078212 2.71709424 Bacteria 2 Bacteria Bacteria 131 2.69e-34   NR MBQ9877088.1 205 g5419 i0 78 3.91666666666667 82 18 97.6 0 247 2 206 287 MBQ9877088.1 1-deoxy-D-xylulose-5-phosphate synthase [Campylobacter sp.] diamond 987 131 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;