RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1020641" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA1020641 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8656056 8656056 PRJNA1020641_P_NODE_2267_length_407_cov_1.350299_g2224_i0 PRJNA1020641 2267 407 1.350299 5.49571693 Deinococcus 1298 Bacteria Bacteria 725 0   NTclustered gi|730601855|gb|CP010028.1| 57497 g2224 i0 98.775 199.791154791155 408 4 100 1 1 407 70233 70640 Deinococcus swuensis strain DY59, complete genome blastn 81315 725 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus radiopugnans
17580842 17580842 PRJNA1020641_P_NODE_6254_length_247_cov_0.994253_g6211_i0 PRJNA1020641 6254 247 0.994253 2.45580491 Deinococcus 1298 Bacteria Bacteria 457 4.05e-124   NTclustered gi|145033|gb|M21413.1|DEIRGDA 1299 g6211 i0 100 133.97975708502 247 0 100 0 1 247 309 555 D.radiodurans 16S ribosomal RNA gene blastn 33093 457 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus radiodurans
25229243 25229243 PRJNA1020641_P_NODE_800_length_660_cov_1.260647_g758_i0 PRJNA1020641 800 660 1.260647 8.3202702 Deinococcus 1298 Bacteria Bacteria 1072 0   NTclustered gi|730601855|gb|CP010028.1| 57497 g758 i0 95.946 221.833333333333 666 17 99 3 1 656 70103 69438 Deinococcus swuensis strain DY59, complete genome blastn 146410 1072 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus radiopugnans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;