RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1020641", tax_kingdom = "Pseudomonadati" and tax_phylum = "Elusimicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Elusimicrobiota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA1020641 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28763961 28763961 PRJNA1020641_P_NODE_5767_length_250_cov_0.870056_g5724_i0 PRJNA1020641 5767 250 0.870056 2.17514 Candidatus Ruminimicrobiellum 3238963 Bacteria Bacteria 124 1.11e-32   NR WP_372519017.1 1947927 g5724 i0 93.8 1.536 64 4 76.8 0 249 58 225 288 WP_372519017.1 phosphate ABC transporter permease subunit PstC [Candidatus Ruminimicrobiellum ovillum] diamond 384 124 1 Bacteria   Pseudomonadati Elusimicrobiota Endomicrobiia Endomicrobiales Endomicrobiaceae Candidatus Ruminimicrobiellum Candidatus Ruminimicrobiellum ovillum
30477361 30477361 PRJNA1020641_P_NODE_7493_length_241_cov_0.916667_g7450_i0 PRJNA1020641 7493 241 0.916667 2.20916747 Elusimicrobiaceae bacterium 2735568 Bacteria Bacteria 134 5.47e-35   NR MBO5910591.1 2735568 g7450 i0 84.8 0.983402489626556 79 12 98.3 0 3 239 417 495 MBO5910591.1 1-deoxy-D-xylulose-5-phosphate synthase [Elusimicrobiaceae bacterium] diamond 237 134 1 Bacteria   Pseudomonadati Elusimicrobiota Elusimicrobia Elusimicrobiales Elusimicrobiaceae   Elusimicrobiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;