RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1020641", tax_clade = "Discoba" and tax_phylum = "Heterolobosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 4 ✖

tax_clade 1

  • Discoba · 4 ✖

bioproject 1

  • PRJNA1020641 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18012360 18012360 PRJNA1020641_P_NODE_2055_length_428_cov_0.923944_g2012_i0 PRJNA1020641 2055 428 0.923944 3.95448032 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 140 2.6e-35   NR XP_002683126.1 5762 g2012 i0 50.3 10.6682242990654 151 60 96 3 16 426 30 179 XP_002683126.1 uncharacterized protein NAEGRDRAFT_77735 [Naegleria gruberi] diamond 4566 140 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
24386676 24386676 PRJNA1020641_P_NODE_7100_length_243_cov_0.905882_g7057_i0 PRJNA1020641 7100 243 0.905882 2.20129326 Creneis carolina 1490885 Heterolobosea other_Eukaryota 198 2.6599999999999998e-46   NTclustered gi|618801424|gb|KJ210090.1| 1490885 g7057 i0 81.557 57.4567901234568 244 41 99 4 2 243 387 628 Creneis carolina strain PC4AM beta-tubulin gene, partial cds blastn 13962 198 1 Eukaryota Discoba   Heterolobosea     Creneidae Creneis Creneis carolina
27563975 27563975 PRJNA1020641_P_NODE_6384_length_247_cov_0.885057_g6341_i0 PRJNA1020641 6384 247 0.885057 2.18609079 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 72.8 1.03e-12   NR XP_044568255.1 5763 g6341 i0 45.5 2.40485829959514 66 36 80.2 0 200 3 2823 2888 XP_044568255.1 uncharacterized protein FDP41_010607 [Naegleria fowleri] diamond 594 72.8 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
30793089 30793089 PRJNA1020641_P_NODE_6654_length_245_cov_0.895349_g6611_i0 PRJNA1020641 6654 245 0.895349 2.19360505 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 69.7 1.14e-11   NR XP_002675059.1 5762 g6611 i0 46.7 0.918367346938776 75 39 90.6 1 243 22 252 326 XP_002675059.1 uncharacterized protein NAEGRDRAFT_69787 [Naegleria gruberi] diamond 225 69.7 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;