RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1016321" and tax_phylum = "Mollusca"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mollusca · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1016321 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5262445 5262445 PRJNA1016321_P_NODE_34385_length_306_cov_2.000000_g34154_i0 PRJNA1016321 34385 306 2 6.12 Octopus bimaculoides 37653 Mollusca Mollusca 357 5.4e-94   NTclustered gi|2427252855|ref|XM_052970110.1| 37653 g34154 i0 89.189 95.8921568627451 296 18 95 9 1 292 2979 3264 PREDICTED: Octopus bimaculoides serine incorporator 5 (LOC106874431), transcript variant X3, mRNA blastn 29343 357 1 Eukaryota Opisthokonta Metazoa Mollusca Cephalopoda Octopoda Octopodidae Octopus Octopus bimaculoides
23112021 23112021 PRJNA1016321_P_NODE_42499_length_270_cov_1.192893_g42268_i0 PRJNA1016321 42499 270 1.192893 3.2208111 Ostreidae 6563 Mollusca Mollusca 79.7 4.3e-15   NR XP_062600034.1 36930 g42268 i0 71.7 2.57777777777778 46 13 51.1 0 270 133 368 413 XP_062600034.1 succinate-semialdehyde dehydrogenase, mitochondrial-like, partial [Saccostrea cuccullata] diamond 696 80.1 0.995006242197254 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Ostreida Ostreidae Saccostrea Saccostrea cuccullata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;