RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1016321" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1016321 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3553338 3553338 PRJNA1016321_P_NODE_55503_length_242_cov_0.911243_g55272_i0 PRJNA1016321 55503 242 0.911243 2.20520806 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 157 2.63e-43   NR MBV9772475.1 2026742 g55272 i0 88.8 9.80578512396694 80 9 99.2 0 240 1 438 517 MBV9772475.1 alpha,alpha-trehalase TreA [Gemmatimonadota bacterium] diamond 2373 157 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
5262457 5262457 PRJNA1016321_P_NODE_35005_length_303_cov_1.652174_g34774_i0 PRJNA1016321 35005 303 1.652174 5.00608722 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 449 8.570000000000001e-122   NTclustered gi|2874253938|emb|OY970263.1| 412054 g34774 i0 93.443 106.881188118812 305 16 100 4 1 303 801968 802270 MAG: uncultured Gemmatimonadales bacterium isolate MFD02416.bin.2.26 genome assembly, chromosome: 1 blastn 32385 449 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
28069414 28069414 PRJNA1016321_P_NODE_39005_length_284_cov_1.459716_g38774_i0 PRJNA1016321 39005 284 1.459716 4.14559344 Bacteria 2 Bacteria Bacteria 47.8 5.7e-4   NR MFP4624532.1 2026742 g38774 i0 52.3 1.57394366197183 44 21 46.5 0 199 68 42 85 MFP4624532.1 SprT family zinc-dependent metalloprotease [Gemmatimonadota bacterium] diamond 447 47.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
31552081 31552081 PRJNA1016321_P_NODE_6316_length_814_cov_2.441296_g6119_i0 PRJNA1016321 6316 814 2.441296 19.87214944 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 170 9.25e-48   NR MBI4408652.1 2026742 g6119 i0 57.1 0.515970515970516 140 60 51.6 0 565 146 1 140 MBI4408652.1 ester cyclase [Gemmatimonadota bacterium] diamond 420 170 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;