RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where bioproject = "PRJNA1016321" and tax_kingdom = "Fusobacteriati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 7 ✖

bioproject 1

  • PRJNA1016321 · 7 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3553275 3553275 PRJNA1016321_P_NODE_1903_length_1387_cov_11.372907_g1022_i1 PRJNA1016321 1903 1387 11.372907 157.74222009 Leptotrichia 32067 Bacteria Bacteria 2440 0   NTclustered gi|470484715|ref|NR_076664.1| 40542 g1022 i1 98.416 420.297043979813 1389 18 100 4 1 1387 217 1603 Leptotrichia buccalis strain C-1013-b 23S ribosomal RNA gene, complete sequence blastn 582952 2440 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia buccalis
4830728 4830728 PRJNA1016321_P_NODE_20144_length_425_cov_3.684659_g19913_i0 PRJNA1016321 20144 425 3.684659 15.65980075 Bacteria 2 Bacteria Bacteria 309 2.2e-79   NTclustered gi|2706401789|gb|CP077129.1| 155615 g19913 i0 80.095 3.97176470588235 422 78 99 5 1 419 1971794 1971376 Fusobacterium vincentii strain KCOM3370 chromosome, complete genome blastn 1688 311 0.993569131832797 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium vincentii
10362983 10362983 PRJNA1016321_P_NODE_44769_length_261_cov_2.180851_g44538_i0 PRJNA1016321 44769 261 2.180851 5.69202111 Leptotrichia alba 3239304 Bacteria Bacteria 448 2.6e-121   NTclustered gi|2785244533|gb|CP165647.1| 3239304 g44538 i0 100 11.4176245210728 242 0 93 0 20 261 154734 154975 Leptotrichia sp. HSP-536 chromosome, complete genome blastn 2980 448 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia alba
12913226 12913226 PRJNA1016321_P_NODE_36191_length_297_cov_1.285714_g35960_i0 PRJNA1016321 36191 297 1.285714 3.81857058 Fusobacterium pseudoperiodonticum 2663009 Bacteria Bacteria 516 8.14e-142   NTclustered gi|1276716588|gb|CP024703.1| 2663009 g35960 i0 99.301 459.6632996633 286 0 96 1 14 297 1342204 1341919 Fusobacterium pseudoperiodonticum strain KCOM 2305 chromosome, complete genome blastn 136520 516 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium pseudoperiodonticum
15461807 15461807 PRJNA1016321_P_NODE_1093_length_1678_cov_20.186293_g1022_i0 PRJNA1016321 1093 1678 20.186293 338.72599654 Leptotrichia sp. oral taxon 212 712357 Bacteria Bacteria 2542 0   NTclustered gi|922689899|gb|CP012410.1| 712357 g1022 i0 94.644 425.874851013111 1643 82 98 6 27 1666 51590 53229 Leptotrichia sp. oral taxon 212 strain W10393, complete genome blastn 714618 2542 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 212
24385758 24385758 PRJNA1016321_P_NODE_39240_length_283_cov_1.466667_g39009_i0 PRJNA1016321 39240 283 1.466667 4.15066761 Pseudoleptotrichia goodfellowii 157692 Bacteria Bacteria 523 4.5999999999999983e-144   NTclustered gi|1708563796|dbj|AP019822.1| 157692 g39009 i0 100 111.406360424028 283 0 100 0 1 283 397245 397527 Leptotrichia goodfellowii JCM16774 DNA, complete genome blastn 31528 523 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Pseudoleptotrichia Pseudoleptotrichia goodfellowii
25228981 25228981 PRJNA1016321_P_NODE_4800_length_928_cov_4.325146_g4620_i0 PRJNA1016321 4800 928 4.325146 40.13735488 Cetobacterium 180162 Bacteria Bacteria 1583 0   NTclustered gi|2865368125|gb|CP122294.1| 188913 g4620 i0 97.923 512.618534482759 915 18 98 1 1 914 278598 279512 Cetobacterium somerae strain MSU41 plasmid p41_t2, complete sequence blastn 475710 1583 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;