RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA1016321", tax_clade = "Sar" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA1016321 · 7 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2709936 2709936 PRJNA1016321_P_NODE_34723_length_304_cov_7.480519_g34492_i0 PRJNA1016321 34723 304 7.480519 22.74077776 Vorticella sp. 1 2979179 SAR_Eukaryotes SAR_Eukaryotes 516 8.36e-142   NTclustered gi|2304601489|gb|OP458310.1| 2979179 g34492 i0 99.298 93.3651315789474 285 2 94 0 20 304 102 386 Vorticella sp. 1 large subunit ribosomal RNA gene, partial sequence blastn 28383 516 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Vorticellidae Vorticella Vorticella sp. 1
12481643 12481643 PRJNA1016321_P_NODE_57950_length_205_cov_6.159091_g57719_i0 PRJNA1016321 57950 205 6.159091 12.62613655 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 344 2.64e-90   NTclustered gi|10782|emb|X54004.1| 5908 g57719 i0 98.469 89.7560975609756 196 2 96 1 10 205 2944 3138 Tetrahymena pyriformis gene for 26S large subunit ribosomal RNA blastn 18400 344 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena pyriformis
13756118 13756118 PRJNA1016321_P_NODE_24031_length_380_cov_4.332248_g23800_i0 PRJNA1016321 24031 380 4.332248 16.4625424 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 651 0   NTclustered gi|1837628855|gb|MN158348.1| 5909 g23800 i0 99.441 92.0368421052632 358 2 94 0 23 380 2604 2961 Tetrahymena rostrata strain TRAUS 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 34974 651 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena rostrata
14188653 14188653 PRJNA1016321_P_NODE_57832_length_214_cov_19.148936_g57601_i0 PRJNA1016321 57832 214 19.148936 40.97872304 Trithigmostoma cucullulus 1346499 SAR_Eukaryotes SAR_Eukaryotes 248 2.24e-61   NTclustered gi|759083539|gb|KM222156.1| 1346499 g57601 i0 90.957 60.7289719626168 188 12 87 4 6 191 271 87 Trithigmostoma cucullulus voucher CXM08110902 large subunit ribosomal RNA gene, partial sequence blastn 12996 248 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Trithigmostoma Trithigmostoma cucullulus
21836607 21836607 PRJNA1016321_P_NODE_44998_length_260_cov_2.866310_g44767_i0 PRJNA1016321 44998 260 2.86631 7.452406 Tetrahymena rostrata 5909 SAR_Eukaryotes SAR_Eukaryotes 464 2.57e-126   NTclustered gi|1837628855|gb|MN158348.1| 5909 g44767 i0 98.851 83.4 261 2 100 1 1 260 4325 4585 Tetrahymena rostrata strain TRAUS 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 21684 464 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena rostrata
24385645 24385645 PRJNA1016321_P_NODE_33580_length_310_cov_41.818565_g33349_i0 PRJNA1016321 33580 310 41.818565 129.6375515 Kyaroikeus paracetarius 2684852 SAR_Eukaryotes SAR_Eukaryotes 294 4.36e-75   NTclustered gi|1784308422|gb|MN830170.1| 2684852 g33349 i0 85.417 51.9290322580645 288 36 92 5 21 305 23 307 Kyaroikeus paracetarius isolate LJ-I-20170502 large subunit ribosomal RNA gene, partial sequence blastn 16098 294 1 Eukaryota Sar   Ciliophora Phyllopharyngea Dysteriida Kyaroikeidae Kyaroikeus Kyaroikeus paracetarius
24386113 24386113 PRJNA1016321_P_NODE_57540_length_228_cov_2.245161_g57309_i0 PRJNA1016321 57540 228 2.245161 5.11896708 Tetrahymena thermophila 5911 SAR_Eukaryotes SAR_Eukaryotes 132 2.54e-26   NTclustered gi|829192652|ref|XM_001030092.3| 312017 g57309 i0 86.667 0.526315789473684 120 15 53 1 108 227 409 291 Tetrahymena thermophila SB210 40S ribosomal protein S8-2 partial mRNA blastn 120 132 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;