RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1016321", tax_clade = "Sar" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1016321 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1002803 1002803 PRJNA1016321_P_NODE_57081_length_233_cov_3.475000_g56850_i0 PRJNA1016321 57081 233 3.475 8.09675 Bacillariophyta 2836 SAR_Eukaryotes SAR_Eukaryotes 399 6.459999999999998e-107   NTclustered gi|2497507580|gb|OQ694379.1| 1043707 g56850 i0 99.543 186.107296137339 219 1 94 0 14 232 67967 67749 Fragilaria capucina var. mesolepta chloroplast, complete genome blastn 43363 399 1 Eukaryota Sar   Bacillariophyta Fragilariophyceae Fragilariales Fragilariaceae Fragilaria Fragilaria capucina
18011368 18011368 PRJNA1016321_P_NODE_35515_length_300_cov_1.788546_g35284_i0 PRJNA1016321 35515 300 1.788546 5.365638 Encyonema minutum 431330 SAR_Eukaryotes SAR_Eukaryotes 544 3.78e-150   NTclustered gi|168145881|emb|AM710515.1| 431330 g35284 i0 99.333 100.18 300 2 100 0 1 300 1 300 Encyonema minutum partial 28S rRNA gene, strain AT-137.13 blastn 30054 544 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Cymbellales Cymbellaceae Encyonema Encyonema minutum
23955089 23955089 PRJNA1016321_P_NODE_50879_length_247_cov_1.689655_g50648_i0 PRJNA1016321 50879 247 1.689655 4.17344785 Coscinodiscophyceae 33836 SAR_Eukaryotes SAR_Eukaryotes 388 1.5e-103   NTclustered gi|98990738|gb|DQ514914.1| 29207 g50648 i0 99.531 86.2348178137652 213 1 86 0 20 232 1435 1647 Stephanodiscus hantzschii strain WTC21 18S small subunit ribosomal RNA gene, partial sequence blastn 21300 388 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Stephanodiscales Stephanodiscaceae Stephanodiscus Stephanodiscus hantzschii
25228994 25228994 PRJNA1016321_P_NODE_57820_length_216_cov_8.755245_g57589_i0 PRJNA1016321 57820 216 8.755245 18.9113292 Fragilaria 33644 SAR_Eukaryotes SAR_Eukaryotes 324 3.66e-84   NTclustered gi|18698483|gb|AF417684.1| 185980 g57589 i0 96.429 80.5462962962963 196 7 91 0 21 216 90 285 Fragilaria capucina strain M1767 large subunit ribosomal RNA gene, partial sequence blastn 17398 324 1 Eukaryota Sar   Bacillariophyta Fragilariophyceae Fragilariales Fragilariaceae Fragilaria Fragilaria capucina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;