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contig_metadata

12 rows where bioproject = "PRJNA1016321" and tax_clade = "Sar"

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tax_superkingdom 1

tax_clade 1

  • Sar · 12 ✖

bioproject 1

  • PRJNA1016321 · 12 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1002803 1002803 PRJNA1016321_P_NODE_57081_length_233_cov_3.475000_g56850_i0 PRJNA1016321 57081 233 3.475 8.09675 Bacillariophyta 2836 SAR_Eukaryotes SAR_Eukaryotes 399 6.459999999999998e-107   NTclustered gi|2497507580|gb|OQ694379.1| 1043707 g56850 i0 99.543 186.107296137339 219 1 94 0 14 232 67967 67749 Fragilaria capucina var. mesolepta chloroplast, complete genome blastn 43363 399 1 Eukaryota Sar   Bacillariophyta Fragilariophyceae Fragilariales Fragilariaceae Fragilaria Fragilaria capucina
2709936 2709936 PRJNA1016321_P_NODE_34723_length_304_cov_7.480519_g34492_i0 PRJNA1016321 34723 304 7.480519 22.74077776 Vorticella sp. 1 2979179 SAR_Eukaryotes SAR_Eukaryotes 516 8.36e-142   NTclustered gi|2304601489|gb|OP458310.1| 2979179 g34492 i0 99.298 93.3651315789474 285 2 94 0 20 304 102 386 Vorticella sp. 1 large subunit ribosomal RNA gene, partial sequence blastn 28383 516 1 Eukaryota Sar   Ciliophora Oligohymenophorea Sessilida Vorticellidae Vorticella Vorticella sp. 1
12481643 12481643 PRJNA1016321_P_NODE_57950_length_205_cov_6.159091_g57719_i0 PRJNA1016321 57950 205 6.159091 12.62613655 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 344 2.64e-90   NTclustered gi|10782|emb|X54004.1| 5908 g57719 i0 98.469 89.7560975609756 196 2 96 1 10 205 2944 3138 Tetrahymena pyriformis gene for 26S large subunit ribosomal RNA blastn 18400 344 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena pyriformis
13756118 13756118 PRJNA1016321_P_NODE_24031_length_380_cov_4.332248_g23800_i0 PRJNA1016321 24031 380 4.332248 16.4625424 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 651 0   NTclustered gi|1837628855|gb|MN158348.1| 5909 g23800 i0 99.441 92.0368421052632 358 2 94 0 23 380 2604 2961 Tetrahymena rostrata strain TRAUS 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 34974 651 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena rostrata
14188653 14188653 PRJNA1016321_P_NODE_57832_length_214_cov_19.148936_g57601_i0 PRJNA1016321 57832 214 19.148936 40.97872304 Trithigmostoma cucullulus 1346499 SAR_Eukaryotes SAR_Eukaryotes 248 2.24e-61   NTclustered gi|759083539|gb|KM222156.1| 1346499 g57601 i0 90.957 60.7289719626168 188 12 87 4 6 191 271 87 Trithigmostoma cucullulus voucher CXM08110902 large subunit ribosomal RNA gene, partial sequence blastn 12996 248 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Trithigmostoma Trithigmostoma cucullulus
18011368 18011368 PRJNA1016321_P_NODE_35515_length_300_cov_1.788546_g35284_i0 PRJNA1016321 35515 300 1.788546 5.365638 Encyonema minutum 431330 SAR_Eukaryotes SAR_Eukaryotes 544 3.78e-150   NTclustered gi|168145881|emb|AM710515.1| 431330 g35284 i0 99.333 100.18 300 2 100 0 1 300 1 300 Encyonema minutum partial 28S rRNA gene, strain AT-137.13 blastn 30054 544 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Cymbellales Cymbellaceae Encyonema Encyonema minutum
19285357 19285357 PRJNA1016321_P_NODE_39396_length_282_cov_2.918660_g39165_i0 PRJNA1016321 39396 282 2.91866 8.2306212 Rhytidocystis dobrovolskiji 2719951 SAR_Eukaryotes SAR_Eukaryotes 150 8.97e-32   NTclustered gi|1823682786|gb|MT231947.1| 2719951 g39165 i0 82.514 62.8652482269504 183 21 64 8 102 282 3311 3484 Rhytidocystis dobrovolskiji isolate OL_MBS2015 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 17728 150 1 Eukaryota Sar   Apicomplexa Marosporida Agamococcidiorida Rhytidocystidae Rhytidocystis Rhytidocystis dobrovolskiji
21836607 21836607 PRJNA1016321_P_NODE_44998_length_260_cov_2.866310_g44767_i0 PRJNA1016321 44998 260 2.86631 7.452406 Tetrahymena rostrata 5909 SAR_Eukaryotes SAR_Eukaryotes 464 2.57e-126   NTclustered gi|1837628855|gb|MN158348.1| 5909 g44767 i0 98.851 83.4 261 2 100 1 1 260 4325 4585 Tetrahymena rostrata strain TRAUS 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 21684 464 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena rostrata
23955089 23955089 PRJNA1016321_P_NODE_50879_length_247_cov_1.689655_g50648_i0 PRJNA1016321 50879 247 1.689655 4.17344785 Coscinodiscophyceae 33836 SAR_Eukaryotes SAR_Eukaryotes 388 1.5e-103   NTclustered gi|98990738|gb|DQ514914.1| 29207 g50648 i0 99.531 86.2348178137652 213 1 86 0 20 232 1435 1647 Stephanodiscus hantzschii strain WTC21 18S small subunit ribosomal RNA gene, partial sequence blastn 21300 388 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Stephanodiscales Stephanodiscaceae Stephanodiscus Stephanodiscus hantzschii
24385645 24385645 PRJNA1016321_P_NODE_33580_length_310_cov_41.818565_g33349_i0 PRJNA1016321 33580 310 41.818565 129.6375515 Kyaroikeus paracetarius 2684852 SAR_Eukaryotes SAR_Eukaryotes 294 4.36e-75   NTclustered gi|1784308422|gb|MN830170.1| 2684852 g33349 i0 85.417 51.9290322580645 288 36 92 5 21 305 23 307 Kyaroikeus paracetarius isolate LJ-I-20170502 large subunit ribosomal RNA gene, partial sequence blastn 16098 294 1 Eukaryota Sar   Ciliophora Phyllopharyngea Dysteriida Kyaroikeidae Kyaroikeus Kyaroikeus paracetarius
24386113 24386113 PRJNA1016321_P_NODE_57540_length_228_cov_2.245161_g57309_i0 PRJNA1016321 57540 228 2.245161 5.11896708 Tetrahymena thermophila 5911 SAR_Eukaryotes SAR_Eukaryotes 132 2.54e-26   NTclustered gi|829192652|ref|XM_001030092.3| 312017 g57309 i0 86.667 0.526315789473684 120 15 53 1 108 227 409 291 Tetrahymena thermophila SB210 40S ribosomal protein S8-2 partial mRNA blastn 120 132 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
25228994 25228994 PRJNA1016321_P_NODE_57820_length_216_cov_8.755245_g57589_i0 PRJNA1016321 57820 216 8.755245 18.9113292 Fragilaria 33644 SAR_Eukaryotes SAR_Eukaryotes 324 3.66e-84   NTclustered gi|18698483|gb|AF417684.1| 185980 g57589 i0 96.429 80.5462962962963 196 7 91 0 21 216 90 285 Fragilaria capucina strain M1767 large subunit ribosomal RNA gene, partial sequence blastn 17398 324 1 Eukaryota Sar   Bacillariophyta Fragilariophyceae Fragilariales Fragilariaceae Fragilaria Fragilaria capucina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;