RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1013345", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 2 ✖

bioproject 1

  • PRJNA1013345 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28298127 28298127 PRJNA1013345_P_NODE_28986_length_160_cov_0.902655_g28856_i0 PRJNA1013345 28986 160 0.902655 1.444248 Cooperia oncophora 27828 Nematoda Nematoda 45.8 3.76e-4   NR KAK6036581.1 27828 g28856 i0 69.7 0.61875 33 9 60 1 129 34 3 35 KAK6036581.1 Helix-loop-helix DNA-binding domain protein [Cooperia oncophora] diamond 99 45.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Cooperia Cooperia oncophora
28582504 28582504 PRJNA1013345_P_NODE_4407_length_285_cov_1.563025_g4278_i0 PRJNA1013345 4407 285 1.563025 4.45462125 Trichuris suis 68888 Nematoda Nematoda 43.5 0.0314   NR KFD54975.1 68888 g4278 i0 35.4 0.505263157894737 48 31 50.5 0 220 77 47 94 KFD54975.1 hypothetical protein M513_04157 [Trichuris suis] diamond 144 43.5 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;