RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1012699" and tax_phylum = "Endomyxa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1012699 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
158032 158032 PRJNA1012699_P_NODE_441_length_513_cov_1.763636_g409_i0 PRJNA1012699 441 513 1.763636 9.04745268 Arachnula sp. CL22 862246 SAR_Eukaryotes SAR_Eukaryotes 359 2.64e-94   NTclustered gi|301014696|gb|GQ377694.1| 862246 g409 i0 88.966 41.140350877193 290 32 57 0 193 482 2 291 Arachnula sp. CL22 ribosomal protein S23a (rps23a) mRNA, partial cds blastn 21105 359 1 Eukaryota Sar   Endomyxa   Vampyrellida Leptophryidae Arachnula Arachnula sp. CL22
19283680 19283680 PRJNA1012699_P_NODE_476_length_498_cov_2.190588_g444_i0 PRJNA1012699 476 498 2.190588 10.90912824 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 225 1.2099999999999998e-72   NR CEP00218.1 37360 g444 i0 69.4 2.82530120481928 157 45 92.8 1 2 463 7 163 CEP00218.1 hypothetical protein PBRA_007952 [Plasmodiophora brassicae] diamond 1407 225 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
29245454 29245454 PRJNA1012699_P_NODE_3129_length_249_cov_0.886364_g3097_i0 PRJNA1012699 3129 249 0.886364 2.20704636 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 43.1 0.0269   NR CEP02334.1 37360 g3097 i0 34.9 1 83 50 98.8 2 247 2 122 201 CEP02334.1 hypothetical protein PBRA_008918 [Plasmodiophora brassicae] diamond 249 43.1 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;