RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1012699" and tax_clade = "core chlorophytes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 3 ✖

bioproject 1

  • PRJNA1012699 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6536194 6536194 PRJNA1012699_P_NODE_1366_length_322_cov_1.236948_g1334_i0 PRJNA1012699 1366 322 1.236948 3.98297256 Chlamydomonas reinhardtii 3055 Plants Plants 172 2.22e-38   NTclustered gi|2082260551|ref|XM_001702928.2| 3055 g1334 i0 82.812 11.7298136645963 192 33 60 0 2 193 350 159 Chlamydomonas reinhardtii ribosomal protein S11 (CHLRE_12g514500v5), mRNA blastn 3777 172 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
27532658 27532658 PRJNA1012699_P_NODE_1863_length_286_cov_1.849765_g1831_i0 PRJNA1012699 1863 286 1.849765 5.2903279 Eukaryota 2759 Plants Plants 119 1.4e-32   NR PSC73192.1 554055 g1831 i0 64.4 15.1048951048951 90 32 94.4 0 285 16 19 108 PSC73192.1 Ribosomal L35Ae family isoform 1 [Micractinium conductrix] diamond 4320 119 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Micractinium Micractinium conductrix
30351364 30351364 PRJNA1012699_P_NODE_3652_length_245_cov_0.877907_g3620_i0 PRJNA1012699 3652 245 0.877907 2.15087215 Edaphochlamys debaryana 47281 Plants Plants 63.9 1.31e-9   NR KAG2485797.1 47281 g3620 i0 48.4 0.759183673469388 62 31 75.9 1 38 223 284 344 KAG2485797.1 hypothetical protein HYH03_015508 [Edaphochlamys debaryana] diamond 186 63.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales   Edaphochlamys Edaphochlamys debaryana

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;