RNAquarium Metadata Server
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contig_metadata

13 rows where bioproject = "PRJNA1011844" and tax_phylum = "Foraminifera"

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tax_superkingdom 1

tax_phylum 1

  • Foraminifera · 13 ✖

tax_clade 1

bioproject 1

  • PRJNA1011844 · 13 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1430793 1430793 PRJNA1011844_P_NODE_13042_length_1583_cov_41.674834_g9433_i0 PRJNA1011844 13042 1583 41.674834 659.71262222 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 481 2.49e-164   NR ETO22220.1 46433 g9433 i0 61.4 9.27289955780164 370 137 69.2 2 1392 298 8 376 ETO22220.1 actin [Reticulomyxa filosa] diamond 14679 485 0.991752577319588 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
3984142 3984142 PRJNA1011844_P_NODE_7224_length_2057_cov_7.783770_g5045_i0 PRJNA1011844 7224 2057 7.78377 160.1121489 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 339 6.18e-104   NR ETO11489.1 46433 g5045 i0 35 1.54010695187166 506 288 72 9 1616 135 110 586 ETO11489.1 hypothetical protein RFI_25888 [Reticulomyxa filosa] diamond 3168 339 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
10359184 10359184 PRJNA1011844_P_NODE_13029_length_1584_cov_11.992058_g9426_i0 PRJNA1011844 13029 1584 11.992058 189.95419872 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 189 6.8e-51   NR ETO13238.1 46433 g9426 i0 33.8 0.700757575757576 370 213 66.3 9 89 1138 17 374 ETO13238.1 hypothetical protein RFI_24138 [Reticulomyxa filosa] diamond 1110 189 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
11634600 11634600 PRJNA1011844_P_NODE_13030_length_1584_cov_11.696228_g9426_i1 PRJNA1011844 13030 1584 11.696228 185.26825152 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 189 6.8e-51   NR ETO13238.1 46433 g9426 i1 33.8 0.700757575757576 370 213 66.3 9 1496 447 17 374 ETO13238.1 hypothetical protein RFI_24138 [Reticulomyxa filosa] diamond 1110 189 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
11636199 11636199 PRJNA1011844_P_NODE_73470_length_433_cov_4.152778_g64980_i0 PRJNA1011844 73470 433 4.152778 17.98152874 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 182 6.4e-51   NR ETO22759.1 46433 g64980 i0 65.2 5.82678983833718 141 48 97 1 1 420 466 606 ETO22759.1 MutS like protein [Reticulomyxa filosa] diamond 2523 182 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
27287671 27287671 PRJNA1011844_P_NODE_67383_length_470_cov_5.962217_g58942_i0 PRJNA1011844 67383 470 5.962217 28.0224199 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 48.5 0.00308   NR ETO04236.1 46433 g58942 i0 29.9 0.982978723404255 154 82 86.8 7 2 409 104 249 ETO04236.1 hypothetical protein RFI_33164, partial [Reticulomyxa filosa] diamond 462 48.5 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
28803025 28803025 PRJNA1011844_P_NODE_24748_length_1097_cov_5.468750_g18851_i0 PRJNA1011844 24748 1097 5.46875 59.9921875 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 201 2.17e-56   NR ETO32845.1 46433 g18851 i0 34.8 1.99908842297174 362 215 96 10 1070 18 2 353 ETO32845.1 hypothetical protein RFI_04271 [Reticulomyxa filosa] diamond 2193 201 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
29119314 29119314 PRJNA1011844_P_NODE_49269_length_635_cov_6.387900_g41040_i0 PRJNA1011844 49269 635 6.3879 40.563165 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 103 1.6499999999999995e-23   NR ETO09666.1 46433 g41040 i0 40.4 1.24251968503937 166 80 77 7 552 64 44 193 ETO09666.1 hypothetical protein RFI_27710 [Reticulomyxa filosa] diamond 789 103 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
29245315 29245315 PRJNA1011844_P_NODE_119789_length_284_cov_1.317536_g111212_i0 PRJNA1011844 119789 284 1.317536 3.74180224 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 58.5 1.69e-7   NR ETO28957.1 46433 g111212 i0 39 0.623239436619718 59 35 62.3 1 35 211 529 586 ETO28957.1 hypothetical protein RFI_08169, partial [Reticulomyxa filosa] diamond 177 58.5 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
31132630 31132630 PRJNA1011844_P_NODE_19055_length_1291_cov_9.452381_g14158_i0 PRJNA1011844 19055 1291 9.452381 122.03023871 root 1 Root_unresolved Root_unresolved 54.7 4.55e-4   NR ETO07200.1 46433 g14158 i0 44.9 0.618125484120837 69 38 16 0 812 606 115 183 ETO07200.1 hypothetical protein RFI_30194 [Reticulomyxa filosa] diamond 798 55.1 0.992740471869329 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
31891947 31891947 PRJNA1011844_P_NODE_134517_length_264_cov_1.329843_g125939_i0 PRJNA1011844 134517 264 1.329843 3.51078552 root 1 Root_unresolved Root_unresolved 80.5 2.96e-16   NR ETO18786.1 46433 g125939 i0 47.4 2.67045454545455 78 40 88.6 1 20 253 1 77 ETO18786.1 hypothetical protein RFI_18461, partial [Reticulomyxa filosa] diamond 705 80.5 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
32121324 32121324 PRJNA1011844_P_NODE_158258_length_243_cov_0.905882_g149678_i0 PRJNA1011844 158258 243 0.905882 2.20129326 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 68.2 3.83e-11   NR ETO36256.1 46433 g149678 i0 42.3 0.962962962962963 78 42 92.6 1 231 7 156 233 ETO36256.1 u5 small nuclear ribonucleoprotein 40 kDa protein isoform 1 [Reticulomyxa filosa] diamond 234 68.2 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
32871342 32871342 PRJNA1011844_P_NODE_72240_length_440_cov_3.564033_g63759_i0 PRJNA1011844 72240 440 3.564033 15.6817452 Eustigmatales 425074 SAR_Eukaryotes SAR_Eukaryotes 77 3.39e-13   NR ETO25790.1 46433 g63759 i0 50.7 1.33636363636364 67 33 45.7 0 235 435 70 136 ETO25790.1 P450 (cytochrome) oxidoreductase [Reticulomyxa filosa] diamond 588 77 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;