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contig_metadata

18 rows where bioproject = "PRJNA1011844", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 18 ✖

tax_clade 1

  • delta/epsilon subdivisions · 18 ✖

bioproject 1

  • PRJNA1011844 · 18 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3982393 3982393 PRJNA1011844_P_NODE_123204_length_279_cov_1.281553_g114627_i0 PRJNA1011844 123204 279 1.281553 3.57553287 uncultured delta proteobacterium 34034 Bacteria Bacteria 473 4.629999999999999e-129   NTclustered gi|511202453|gb|KC994684.1| 34034 g114627 i0 99.614 92.0215053763441 259 1 93 0 14 272 74 332 Uncultured delta proteobacterium clone BF 004 16S ribosomal RNA gene, partial sequence blastn 25674 473 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
6535366 6535366 PRJNA1011844_P_NODE_43106_length_715_cov_8.185358_g35144_i0 PRJNA1011844 43106 715 8.185358 58.5253097 Bradymonas sediminis 1548548 Bacteria Bacteria 54.7 0.02   NTclustered gi|1406952946|gb|CP030032.1| 1548548 g35144 i0 100 0.0405594405594406 29 0 4 0 117 145 841354 841382 Bradymonas sediminis strain FA350 chromosome, complete genome blastn 29 54.7 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Bradymonadaceae Bradymonas Bradymonas sediminis
16304244 16304244 PRJNA1011844_P_NODE_116793_length_288_cov_4.520930_g108217_i0 PRJNA1011844 116793 288 4.52093 13.0202784 Myxococcota 2818505 Bacteria Bacteria 243 1.47e-59   NTclustered gi|253317382|gb|GQ249356.1| 34034 g108217 i0 97.887 67.5729166666667 142 0 89 3 139 279 1334 1195 Uncultured delta proteobacterium clone A8 16S ribosomal RNA gene, partial sequence blastn 19461 243 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
28732530 28732530 PRJNA1011844_P_NODE_87647_length_368_cov_1.355932_g79096_i0 PRJNA1011844 87647 368 1.355932 4.98982976 Bacteria 2 Bacteria Bacteria 87.8 2.67e-17   NR CAB1077626.1 334747 g79096 i0 44.5 7.84239130434783 110 58 88 2 22 345 434 542 CAB1077626.1 odd Oz/ten-m homolog 4 [Olavius algarvensis Delta 1 endosymbiont] diamond 2886 88.2 0.99546485260771 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Olavius algarvensis Delta 1 endosymbiont
28897879 28897879 PRJNA1011844_P_NODE_26068_length_1061_cov_6.983806_g19956_i0 PRJNA1011844 26068 1061 6.983806 74.09818166 Deltaproteobacteria bacterium RBG_16_71_12 1797848 Bacteria Bacteria 187 1.96e-52   NR OGQ09132.1 1797848 g19956 i0 40.4 1.77568331762488 312 171 87.9 10 4 936 24 321 OGQ09132.1 MAG: hypothetical protein A2138_11965 [Deltaproteobacteria bacterium RBG_16_71_12] diamond 1884 187 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RBG_16_71_12
29308469 29308469 PRJNA1011844_P_NODE_83709_length_383_cov_5.648387_g75166_i0 PRJNA1011844 83709 383 5.648387 21.63332221 SAR324 cluster bacterium 2024889 Bacteria Bacteria 45.1 0.0269   NR MBF0289305.1 2024889 g75166 i0 32.5 0.892950391644909 114 67 89.3 4 358 17 773 876 MBF0289305.1 GAF domain-containing protein [SAR324 cluster bacterium] diamond 342 45.1 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium
29340216 29340216 PRJNA1011844_P_NODE_58949_length_536_cov_3.198704_g50569_i0 PRJNA1011844 58949 536 3.198704 17.14505344 SAR324 cluster bacterium 2024889 Bacteria Bacteria 76.3 1.5e-12   NR MCH8843004.1 2024889 g50569 i0 32.3 0.867537313432836 155 98 86.8 4 473 9 187 334 MCH8843004.1 carboxypeptidase-like regulatory domain-containing protein [SAR324 cluster bacterium] diamond 465 76.3 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium
29908574 29908574 PRJNA1011844_P_NODE_26591_length_1045_cov_143.746914_g4222_i4 PRJNA1011844 26591 1045 143.746914 1502.1552513 Deltaproteobacteria bacterium HGW-Deltaproteobacteria-17 2013744 Bacteria Bacteria 73.2 5.59e-10   NR PKN47327.1 2013744 g4222 i4 26 1.67942583732057 304 180 74.6 10 1034 255 328 630 PKN47327.1 MAG: hypothetical protein CVU59_03220 [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-17] diamond 1755 73.2 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium HGW-Deltaproteobacteria-17
29908652 29908652 PRJNA1011844_P_NODE_90231_length_358_cov_5.070175_g81674_i0 PRJNA1011844 90231 358 5.070175 18.1512265 SAR324 cluster bacterium 2024889 Bacteria Bacteria 42 0.0432   NR MCH2301299.1 2024889 g81674 i0 44.1 0.284916201117318 34 19 28.5 0 111 10 11 44 MCH2301299.1 AMP-binding protein [SAR324 cluster bacterium] diamond 102 42 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium
30097967 30097967 PRJNA1011844_P_NODE_99572_length_328_cov_3.850980_g91004_i0 PRJNA1011844 99572 328 3.85098 12.6312144 SAR324 cluster bacterium 2024889 Bacteria Bacteria 48.5 8.21e-5   NR MDP7171771.1 2024889 g91004 i0 52.9 0.310975609756098 34 16 31.1 0 2 103 11 44 MDP7171771.1 membrane-binding protein [SAR324 cluster bacterium] diamond 102 48.5 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium
30477206 30477206 PRJNA1011844_P_NODE_118453_length_286_cov_1.309859_g109877_i0 PRJNA1011844 118453 286 1.309859 3.74619674 delta proteobacterium MLS_D 1775673 Bacteria Bacteria 57 5.8e-7   NR OPL16401.1 1775673 g109877 i0 41.8 0.954545454545455 91 53 95.5 0 284 12 414 504 OPL16401.1 MAG: hypothetical protein AVO39_05990 [delta proteobacterium MLS_D] diamond 273 57 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       delta proteobacterium MLS_D
30943476 30943476 PRJNA1011844_P_NODE_117534_length_287_cov_2.925234_g108958_i0 PRJNA1011844 117534 287 2.925234 8.39542158 Pseudomonadota 1224 Bacteria Bacteria 45.1 0.00359   NR PIR20391.1 1973975 g108958 i0 43.5 1.66202090592334 46 24 48.1 2 169 32 28 71 PIR20391.1 MAG: hypothetical protein COV45_06345 [Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_47_16] diamond 477 45.1 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_47_16
31425247 31425247 PRJNA1011844_P_NODE_91096_length_355_cov_3.468085_g82538_i0 PRJNA1011844 91096 355 3.468085 12.31170175 SAR324 cluster bacterium 2024889 Bacteria Bacteria 48.1 0.00169   NR MBF0351916.1 2024889 g82538 i0 40.7 0.684507042253521 81 43 65.9 2 235 2 348 426 MBF0351916.1 adenylate/guanylate cyclase domain-containing protein [SAR324 cluster bacterium] diamond 243 48.1 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium
31456934 31456934 PRJNA1011844_P_NODE_151536_length_247_cov_1.729885_g142957_i0 PRJNA1011844 151536 247 1.729885 4.27281595 delta proteobacterium NaphS2 88274 Bacteria Bacteria 78.6 9.49e-15   NR EFK06099.1 88274 g142957 i0 51.9 0.959514170040486 79 37 94.7 1 12 245 825 903 EFK06099.1 RHS repeat-associated core domain protein [delta proteobacterium NaphS2] diamond 237 78.6 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       delta proteobacterium NaphS2
31860142 31860142 PRJNA1011844_P_NODE_102397_length_320_cov_3.578947_g93827_i0 PRJNA1011844 102397 320 3.578947 11.4526304 root 1 Root_unresolved Root_unresolved 63.5 3.67e-9   NR MBN1945956.1 2099667 g93827 i0 40.7 4.1625 86 42 73.1 2 295 62 221 305 MBN1945956.1 alpha/beta hydrolase [Bradymonadales bacterium] diamond 1332 63.5 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales     Bradymonadales bacterium
32437765 32437765 PRJNA1011844_P_NODE_112339_length_297_cov_2.473214_g103763_i0 PRJNA1011844 112339 297 2.473214 7.34544558 SAR324 cluster bacterium 2024889 Bacteria Bacteria 95.1 4.92e-22   NR MED5571417.1 2024889 g103763 i0 56.5 9.60606060606061 85 35 84.8 2 282 31 95 178 MED5571417.1 glutamine--tRNA ligase [SAR324 cluster bacterium] diamond 2853 95.1 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium
32532681 32532681 PRJNA1011844_P_NODE_124879_length_276_cov_4.177340_g116302_i0 PRJNA1011844 124879 276 4.17734 11.5294584 SAR324 cluster bacterium 2024889 Bacteria Bacteria 65.5 5.55e-10   NR MCH8843004.1 2024889 g116302 i0 42.3 0.847826086956522 78 43 82.6 1 267 40 273 350 MCH8843004.1 carboxypeptidase-like regulatory domain-containing protein [SAR324 cluster bacterium] diamond 234 65.5 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium
32721525 32721525 PRJNA1011844_P_NODE_109340_length_304_cov_2.735931_g100766_i0 PRJNA1011844 109340 304 2.735931 8.31723024 Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_ 2026735 Bacteria Bacteria 87.4 3.42e-18   NR PIR20222.1 1973975 g100766 i0 43.5 0.907894736842105 92 48 90.8 1 23 298 16 103 PIR20222.1 MAG: hypothetical protein COV45_07750 [Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_47_16] diamond 276 87.4 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_47_16

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;