RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1011844" and tax_clade = "SAR202 cluster"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • SAR202 cluster · 2 ✖

bioproject 1

  • PRJNA1011844 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27793077 27793077 PRJNA1011844_P_NODE_43284_length_713_cov_2.853125_g35314_i0 PRJNA1011844 43284 713 2.853125 20.34278125 SAR2 2030829 Bacteria Bacteria 73.9 8.69e-12   NR PCI19259.1 2030829 g35314 i0 30.7 1.70406732117812 205 103 76.6 10 692 147 4 192 PCI19259.1 MAG: hypothetical protein COB68_05575 [SAR202 cluster bacterium] diamond 1215 73.9 1 Bacteria SAR202 cluster Bacillati Chloroflexota Dehalococcoidia       SAR202 cluster bacterium
28140449 28140449 PRJNA1011844_P_NODE_126145_length_275_cov_1.158416_g117567_i0 PRJNA1011844 126145 275 1.158416 3.185644 SAR202 cluster bacterium 2030829 Bacteria Bacteria 48.5 4.85e-4   NR MBM3948154.1 2030829 g117567 i0 54.5 0.992727272727273 44 19 48 1 253 122 345 387 MBM3948154.1 hypothetical protein [SAR202 cluster bacterium] diamond 273 48.5 1 Bacteria SAR202 cluster Bacillati Chloroflexota Dehalococcoidia       SAR202 cluster bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;