RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1011844", tax_clade = "PVC group" and tax_phylum = "Lentisphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA1011844 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11635326 11635326 PRJNA1011844_P_NODE_24450_length_1105_cov_6.792636_g18596_i0 PRJNA1011844 24450 1105 6.792636 75.0586278 PVC group 1783257 Bacteria Bacteria 81.6 1.16e-12   NR MBR2357831.1 2053569 g18596 i0 31.1 3.01628959276018 183 109 48.3 5 623 90 74 244 MBR2357831.1 protein kinase [Lentisphaeria bacterium] diamond 3333 81.6 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria       Lentisphaeria bacterium
27571837 27571837 PRJNA1011844_P_NODE_122424_length_280_cov_1.420290_g113847_i0 PRJNA1011844 122424 280 1.42029 3.976812 Lentisphaerota bacterium 1932692 Bacteria Bacteria 105 7.699999999999998e-25   NR HHX98787.1 1932692 g113847 i0 71.8 1.52142857142857 71 20 76.1 0 214 2 119 189 HHX98787.1 restriction endonuclease [Lentisphaerota bacterium] diamond 426 105 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium
28045467 28045467 PRJNA1011844_P_NODE_21105_length_1214_cov_11.161262_g15820_i0 PRJNA1011844 21105 1214 11.161262 135.49772068 Victivallis sp. 2049020 Bacteria Bacteria 52.4 0.00363   NR MEI2999329.1 2049020 g15820 i0 39.2 0.182866556836903 74 42 17.5 2 459 247 629 702 MEI2999329.1 sugar-binding domain-containing protein [Victivallis sp.] diamond 222 52.4 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales Victivallaceae Victivallis Victivallis sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;