RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA1011844", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 7 ✖

tax_clade 1

  • Amoebozoa · 7 ✖

bioproject 1

  • PRJNA1011844 · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9083173 9083173 PRJNA1011844_P_NODE_101728_length_322_cov_2.863454_g93158_i0 PRJNA1011844 101728 322 2.863454 9.22032188 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 566 8.729999999999999e-157   NTclustered gi|62910949|gb|AY925001.1| 5778 g93158 i0 100 4.40062111801242 306 0 95 0 5 310 784 479 Hartmannella vermiformis Rpl7A mRNA, partial cds blastn 1417 566 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
13755152 13755152 PRJNA1011844_P_NODE_117951_length_286_cov_105.741784_g109375_i0 PRJNA1011844 117951 286 105.741784 302.42150224 Tubulinea 555369 Tubulinea other_Eukaryota 505 1.69e-138   NTclustered gi|421976371|gb|JQ519505.1| 5778 g109375 i0 100 95.4475524475525 273 0 95 0 4 276 386 114 Vermamoeba vermiformis clone JG10.99 18S ribosomal RNA gene, partial sequence blastn 27298 505 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
21833212 21833212 PRJNA1011844_P_NODE_161098_length_241_cov_1.654762_g152518_i0 PRJNA1011844 161098 241 1.654762 3.98797642 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 152 4.44e-44   NR AFX73093.1 5778 g152518 i0 92.4 0.983402489626556 79 6 98.3 0 238 2 35 113 AFX73093.1 elongation factor 2 alpha, partial [Vermamoeba vermiformis] diamond 237 152 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
22678604 22678604 PRJNA1011844_P_NODE_125638_length_275_cov_3.396040_g117060_i0 PRJNA1011844 125638 275 3.39604 9.33911 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 473 4.55e-129   NTclustered gi|300078496|gb|GU001158.1| 5778 g117060 i0 99.237 28.8218181818182 262 2 95 0 12 273 970 1231 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 7926 473 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
23110032 23110032 PRJNA1011844_P_NODE_78459_length_407_cov_3.044910_g69947_i0 PRJNA1011844 78459 407 3.04491 12.3927837 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 673 0   NTclustered gi|909719645|gb|KT185625.1| 5778 g69947 i0 97.704 28.2530712530713 392 8 96 1 4 395 7121 6731 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 11499 673 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
24382195 24382195 PRJNA1011844_P_NODE_138240_length_259_cov_3.295699_g129662_i0 PRJNA1011844 138240 259 3.295699 8.53586041 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 268 2.1499999999999998e-67   NTclustered gi|62910949|gb|AY925001.1| 5778 g129662 i0 99.329 1.33590733590734 149 0 57 1 2 149 149 1 Hartmannella vermiformis Rpl7A mRNA, partial cds blastn 346 268 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
24383590 24383590 PRJNA1011844_P_NODE_63740_length_497_cov_3.502358_g55324_i0 PRJNA1011844 63740 497 3.502358 17.40671926 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 881 0   NTclustered gi|300078496|gb|GU001158.1| 5778 g55324 i0 99.383 34.0080482897384 486 3 98 0 10 495 2413 2898 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 16902 881 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;