RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1011833" and tax_superkingdom = "Archaea"

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tax_kingdom 2

analysis 2

tax_superkingdom 1

  • Archaea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1011833 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18007276 18007276 PRJNA1011833_S_NODE_50015_length_163_cov_6.500000_g49595_i0 PRJNA1011833 50015 163 6.5 10.595 Vulcanisaeta moutnovskia 985052 Archaea Archaea 52.8 0.014   NTclustered gi|323706731|gb|CP002529.1| 985053 g49595 i0 100 0.171779141104294 28 0 17 0 8 35 336127 336100 Vulcanisaeta moutnovskia 768-28, complete genome blastn 28 52.8 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Thermoproteales Thermoproteaceae Vulcanisaeta Vulcanisaeta moutnovskia
27034674 27034674 PRJNA1011833_S_NODE_45942_length_171_cov_1.500000_g45522_i0 PRJNA1011833 45942 171 1.5 2.565 Candidatus Methanoperedenaceae archaeon GB5 2072416 Archaea Archaea 69.3 1.42e-12   NR CAD7774282.1 2691038 g45522 i0 55.4 1.91228070175439 56 25 98.2 0 169 2 141 196 CAD7774282.1 Protein-L-isoaspartate O-methyltransferase [Candidatus Methanoperedenaceae archaeon GB50] diamond 327 69.3 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Candidatus Methanoperedentaceae   Candidatus Methanoperedenaceae archaeon GB50
28550818 28550818 PRJNA1011833_S_NODE_11407_length_351_cov_4.133117_g10987_i0 PRJNA1011833 11407 351 4.133117 14.50724067 archaeon 1906665 Archaea Archaea 62.4 1.04e-9   NR MDP2437349.1 1906665 g10987 i0 64.3 4.33333333333333 42 15 35.9 0 224 349 1 42 MDP2437349.1 SH3 domain-containing protein [archaeon] diamond 1521 62.4 1 Archaea               archaeon
28992973 28992973 PRJNA1011833_S_NODE_20908_length_263_cov_2.809091_g20488_i0 PRJNA1011833 20908 263 2.809091 7.38790933 Halobacterium jilantaiense 355548 Archaea Archaea 42.7 0.0444   NR WP_089668695.1 355548 g20488 i0 33.3 0.787072243346008 69 46 78.7 0 210 4 98 166 WP_089668695.1 tyrosine-type recombinase/integrase [Halobacterium jilantaiense] diamond 207 42.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Halobacterium Halobacterium jilantaiense

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;