RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1011833" and tax_phylum = "Campylobacterota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1011833 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2276772 2276772 PRJNA1011833_S_NODE_5402_length_456_cov_2.760291_g4990_i0 PRJNA1011833 5402 456 2.760291 12.58692696 Campylobacter 194 Bacteria Bacteria 54.7 0.012   NTclustered gi|1153133932|gb|CP012548.1| 1660067 g4990 i0 100 0.317982456140351 29 0 6 0 329 357 883498 883526 Campylobacter pinnipediorum subsp. pinnipediorum strain RM17262 chromosome, complete genome blastn 145 54.7 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter pinnipediorum
3981732 3981732 PRJNA1011833_S_NODE_17204_length_291_cov_10.209677_g16784_i0 PRJNA1011833 17204 291 10.209677 29.71016007 Malaciobacter marinus 505249 Bacteria Bacteria 52.8 0.027   NTclustered gi|1474785413|gb|CP032101.1| 505249 g16784 i0 100 0.0962199312714777 28 0 10 0 151 178 1771318 1771291 Malaciobacter marinus strain JCM 15502 chromosome, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Malaciobacter Malaciobacter marinus
27319305 27319305 PRJNA1011833_S_NODE_54383_length_156_cov_1.699115_g53963_i0 PRJNA1011833 54383 156 1.699115 2.6506194 Helicobacter pylori 210 Bacteria Bacteria 51.2 5.88e-7   NR GAA9046884.1 210 g53963 i0 73.3 0.576923076923077 30 7 55.8 1 92 6 23 52 GAA9046884.1 hypothetical protein Kyoto184A_03270 [Helicobacter pylori] diamond 90 51.2 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;