RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1011833" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1011833 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1430356 1430356 PRJNA1011833_S_NODE_8002_length_401_cov_4.326816_g7585_i0 PRJNA1011833 8002 401 4.326816 17.35053216 Eimeria tenella 5802 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.003   NTclustered gi|916416283|ref|XM_013373919.1| 5802 g7585 i0 100 0.214463840399002 30 0 7 0 54 83 623 594 Eimeria tenella uncharacterized protein (ETH_00000385), partial mRNA blastn 86 56.5 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria tenella
9082822 9082822 PRJNA1011833_S_NODE_15128_length_310_cov_5.595506_g14708_i0 PRJNA1011833 15128 310 5.595506 17.3460686 Plasmodium knowlesi 5850 SAR_Eukaryotes SAR_Eukaryotes 65.8 3.72e-6   NTclustered gi|221052297|ref|XM_002257689.1| 5851 g14708 i0 93.333 5.81612903225806 45 2 14 1 264 307 1291 1247 Plasmodium knowlesi strain H conserved Plasmodium protein, unknown function (PKNH_0205400), partial mRNA blastn 1803 65.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium knowlesi
18007170 18007170 PRJNA1011833_S_NODE_35255_length_197_cov_1.246753_g34835_i0 PRJNA1011833 35255 197 1.246753 2.45610341 Plasmodium gallinaceum 5849 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.017   NTclustered gi|1620132018|ref|XM_028674360.1| 5849 g34835 i0 96.774 0.157360406091371 31 1 16 0 6 36 1061 1031 Plasmodium gallinaceum aspartate--tRNA ligase, putative (PGAL8A_00035800), partial mRNA blastn 31 52.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium gallinaceum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;