RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1011833" and tax_kingdom = "Fusobacteriati"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 4 ✖

bioproject 1

  • PRJNA1011833 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1430346 1430346 PRJNA1011833_S_NODE_6282_length_435_cov_2.262755_g5869_i0 PRJNA1011833 6282 435 2.262755 9.84298425 Cetobacterium somerae 188913 Bacteria Bacteria 728 0   NTclustered gi|2201062197|gb|CP092519.1| 188913 g5869 i0 98.78 424.466666666667 410 4 94 1 26 435 48874 49282 Cetobacterium somerae strain CS2105-BJ chromosome, complete genome blastn 184643 728 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
6533640 6533640 PRJNA1011833_S_NODE_4726_length_475_cov_5.997685_g4319_i0 PRJNA1011833 4726 475 5.997685 28.48900375 Fusobacterium nucleatum 851 Bacteria Bacteria 52.8 0.046   NTclustered gi|2704972056|gb|CP077127.1| 851 g4319 i0 100 0.117894736842105 28 0 6 0 82 109 1472586 1472613 Fusobacterium nucleatum strain KCOM3503 chromosome, complete genome blastn 56 52.8 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
21403702 21403702 PRJNA1011833_S_NODE_837_length_901_cov_19.599068_g629_i0 PRJNA1011833 837 901 19.599068 176.58760268 Cetobacterium 180162 Bacteria Bacteria 1580 0   NTclustered gi|2865368125|gb|CP122294.1| 188913 g629 i0 99.201 503.076581576027 876 7 97 0 26 901 278800 279675 Cetobacterium somerae strain MSU41 plasmid p41_t2, complete sequence blastn 453272 1580 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
31456875 31456875 PRJNA1011833_S_NODE_1836_length_652_cov_9.850575_g1505_i0 PRJNA1011833 1836 652 9.850575 64.225749 Fusobacterium periodonticum 860 Bacteria Bacteria 50.4 0.00142   NR WP_204640299.1 860 g1505 i0 28.3 0.667177914110429 145 91 64.4 4 643 224 87 223 WP_204640299.1 cell division protein FtsZ [Fusobacterium periodonticum] diamond 435 50.4 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium periodonticum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;