RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1011833", tax_kingdom = "Bacillati" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 3 ✖

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJNA1011833 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29560821 29560821 PRJNA1011833_S_NODE_60390_length_150_cov_1.710280_g59970_i0 PRJNA1011833 60390 150 1.71028 2.56542 Chloroflexi bacterium ADurb.Bin36 1852861 Bacteria Bacteria 42 0.0194   NR OQA15659.1 1852861 g59970 i0 47.4 0.76 38 20 76 0 12 125 362 399 OQA15659.1 MAG: ATP-dependent RNA helicase DbpA [Chloroflexi bacterium ADurb.Bin360] diamond 114 42 1 Bacteria   Bacillati Chloroflexota         Chloroflexi bacterium ADurb.Bin360
29655307 29655307 PRJNA1011833_S_NODE_56350_length_153_cov_1.745455_g55930_i0 PRJNA1011833 56350 153 1.745455 2.67054615 Chloroflexota bacterium 2026724 Bacteria Bacteria 42.4 0.0154   NR MCY3782836.1 2026724 g55930 i0 35.7 2.23529411764706 42 27 82.4 0 153 28 312 353 MCY3782836.1 DEAD/DEAH box helicase [Chloroflexota bacterium] diamond 342 42.4 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
31828489 31828489 PRJNA1011833_S_NODE_58037_length_152_cov_1.211009_g57617_i0 PRJNA1011833 58037 152 1.211009 1.84073368 Bacillati 1783272 Bacteria Bacteria 42.7 0.00598   NR MCJ7716686.1 2073117 g57617 i0 40.5 2.48684210526316 42 25 82.9 0 17 142 6 47 MCJ7716686.1 acyl-CoA dehydrogenase family protein [Anaerolineales bacterium] diamond 378 42.7 1 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales     Anaerolineales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;