RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA1011833", tax_clade = "Sar" and tax_phylum = "Oomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1011833 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27761567 27761567 PRJNA1011833_S_NODE_50704_length_162_cov_2.201681_g50284_i0 PRJNA1011833 50704 162 2.2016810000000002 3.56672322 Bremia lactucae 4779 SAR_Eukaryotes SAR_Eukaryotes 67.4 2.54e-11   NR XP_067817784.1 4779 g50284 i0 63 2.96296296296296 54 19 98.1 1 159 1 256 309 XP_067817784.1 hypothetical protein CCR75_003227 [Bremia lactucae] diamond 480 67.4 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Bremia Bremia lactucae
30248463 30248463 PRJNA1011833_S_NODE_3032_length_547_cov_6.744048_g2647_i0 PRJNA1011833 3032 547 6.744048 36.88994256 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 184 3.94e-53   NR GLE08162.1 114742 g2647 i0 67.4 8.47897623400366 172 55 93.8 1 542 30 205 376 GLE08162.1 hypothetical protein PINS_up019168 [Pythium insidiosum] diamond 4638 184 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;