RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1011833", tax_clade = "Sar" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1011833 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31614893 31614893 PRJNA1011833_S_NODE_28696_length_221_cov_1.078652_g28276_i0 PRJNA1011833 28696 221 1.078652 2.38382092 Chaetoceros tenuissimus 426638 SAR_Eukaryotes SAR_Eukaryotes 52.8 2.64e-6   NR GFH46202.1 426638 g28276 i0 39.7 1.95475113122172 73 41 95 2 212 3 48 120 GFH46202.1 hypothetical protein CTEN210_02676 [Chaetoceros tenuissimus] diamond 432 52.8 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Chaetocerotales Chaetocerotaceae Chaetoceros Chaetoceros tenuissimus
32493274 32493274 PRJNA1011833_S_NODE_22139_length_255_cov_1.641509_g21719_i0 PRJNA1011833 22139 255 1.641509 4.18584795 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 62.4 5.1e-9   NR VEU39726.1 183589 g21719 i0 42.7 9.61176470588235 75 43 88.2 0 23 247 639 713 VEU39726.1 unnamed protein product [Pseudo-nitzschia multistriata] diamond 2451 62.4 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Pseudo-nitzschia Pseudo-nitzschia multistriata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;