RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1011833", tax_clade = "Metamonada" and tax_phylum = "Fornicata"

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tax_superkingdom 1

tax_phylum 1

  • Fornicata · 2 ✖

tax_clade 1

  • Metamonada · 2 ✖

bioproject 1

  • PRJNA1011833 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28171703 28171703 PRJNA1011833_S_NODE_30026_length_215_cov_1.674419_g29606_i0 PRJNA1011833 30026 215 1.674419 3.60000085 Giardia intestinalis 5741 Fornicata other_Eukaryota 41.6 0.0418   NR ESU43409.1 5741 g29606 i0 38.1 0.87906976744186 63 34 82.3 3 212 36 73 134 ESU43409.1 Hypothetical protein GSB_153417, partial [Giardia intestinalis] diamond 189 41.6 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia duodenalis
32689920 32689920 PRJNA1011833_S_NODE_5700_length_448_cov_1.893827_g5288_i0 PRJNA1011833 5700 448 1.893827 8.48434496 Carpediemonas membranifera 201153 Fornicata other_Eukaryota 58.9 6.6e-7   NR KAG9389433.1 201153 g5288 i0 29.1 3.86383928571429 117 81 77.7 2 369 22 286 401 KAG9389433.1 Adaptor Protein Complex 3 subunit, mu (AP3M) [Carpediemonas membranifera] diamond 1731 58.9 1 Eukaryota Metamonada   Fornicata       Carpediemonas Carpediemonas membranifera

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;