contig_metadata
15 rows where bioproject = "PRJNA1011833" and tax_clade = "FCB group"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2276774 | 2276774 | PRJNA1011833_S_NODE_54762_length_156_cov_0.964602_g54342_i0 | PRJNA1011833 | 54762 | 156 | 0.964602 | 1.50477912 | Sphingobacterium | 28453 | Bacteria | Bacteria | 283 | 4.1899999999999994e-72 | NTclustered | gi|2719408992|gb|CP151087.1| | 259 | g54342 | i0 | 99.359 | 228.711538461538 | 156 | 1 | 100 | 0 | 1 | 156 | 2537389 | 2537544 | Sphingobacterium thalpophilum strain ATCC BAA-1094 chromosome, complete genome | blastn | 35679 | 283 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Sphingobacteriia | Sphingobacteriales | Sphingobacteriaceae | Sphingobacterium | Sphingobacterium thalpophilum | |
| 4829585 | 4829585 | PRJNA1011833_S_NODE_16124_length_301_cov_2.093023_g15704_i0 | PRJNA1011833 | 16124 | 301 | 2.093023 | 6.29999923 | Bacteroidales bacterium | 2030927 | Bacteria | Bacteria | 111 | 1.6300000000000002e-27 | NR | NLV37679.1 | 2030927 | g15704 | i0 | 58 | 0.877076411960133 | 88 | 37 | 87.7 | 0 | 3 | 266 | 166 | 253 | NLV37679.1 glucosamine-6-phosphate deaminase [Bacteroidales bacterium] | diamond | 264 | 111 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Bacteroidia | Bacteroidales | Bacteroidales bacterium | |||
| 9082828 | 9082828 | PRJNA1011833_S_NODE_15848_length_303_cov_6.984615_g15428_i0 | PRJNA1011833 | 15848 | 303 | 6.984615 | 21.16338345 | Flavobacterium dauae | 1563479 | Bacteria | Bacteria | 56.5 | 0.002 | NTclustered | gi|2557430891|gb|CP130821.1| | 1563479 | g15428 | i0 | 100 | 0.099009900990099 | 30 | 0 | 10 | 0 | 271 | 300 | 1161409 | 1161438 | Flavobacterium dauae strain TCH3-2 chromosome, complete genome | blastn | 30 | 56.5 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Flavobacteriia | Flavobacteriales | Flavobacteriaceae | Flavobacterium | Flavobacterium dauae | |
| 11633947 | 11633947 | PRJNA1011833_S_NODE_21910_length_256_cov_22.586854_g21490_i0 | PRJNA1011833 | 21910 | 256 | 22.586854 | 57.82234624 | Candidatus Karelsulcia muelleri | 336810 | Bacteria | Bacteria | 62.1 | 3.87e-5 | NTclustered | gi|2717309477|emb|OZ032149.1| | 336810 | g21490 | i0 | 97.222 | 0.140625 | 36 | 1 | 14 | 0 | 72 | 107 | 226088 | 226053 | Candidatus Karelsulcia muelleri isolate 1d4c07cd-1054-4c54-98f9-64159b4f6ee4 genome assembly, chromosome: 1 | blastn | 36 | 62.1 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Flavobacteriia | Flavobacteriales | Candidatus Karelsulcia | Candidatus Karelsulcia muelleri | ||
| 12480408 | 12480408 | PRJNA1011833_S_NODE_28590_length_221_cov_1.859551_g28170_i0 | PRJNA1011833 | 28590 | 221 | 1.859551 | 4.10960771 | Weeksellaceae | 2762318 | Bacteria | Bacteria | 409 | 1.0100000000000001e-109 | NTclustered | gi|1750497007|gb|CP043634.1| | 247 | g28170 | i0 | 100 | 455.787330316742 | 221 | 0 | 100 | 0 | 1 | 221 | 229159 | 228939 | Empedobacter brevis strain SE1-3 chromosome, complete genome | blastn | 100729 | 409 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Flavobacteriia | Flavobacteriales | Weeksellaceae | Empedobacter | Empedobacter brevis | |
| 17579457 | 17579457 | PRJNA1011833_S_NODE_37294_length_191_cov_1.297297_g36874_i0 | PRJNA1011833 | 37294 | 191 | 1.297297 | 2.47783727 | Sphingobacterium | 28453 | Bacteria | Bacteria | 348 | 1.87e-91 | NTclustered | gi|2719408992|gb|CP151087.1| | 259 | g36874 | i0 | 99.476 | 457.738219895288 | 191 | 1 | 100 | 0 | 1 | 191 | 1767388 | 1767578 | Sphingobacterium thalpophilum strain ATCC BAA-1094 chromosome, complete genome | blastn | 87428 | 348 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Sphingobacteriia | Sphingobacteriales | Sphingobacteriaceae | Sphingobacterium | Sphingobacterium thalpophilum | |
| 20556561 | 20556561 | PRJNA1011833_S_NODE_30477_length_213_cov_1.976471_g30057_i0 | PRJNA1011833 | 30477 | 213 | 1.976471 | 4.20988323 | Thermoflavifilum sp. | 1968839 | Bacteria | Bacteria | 56.5 | 0.001 | NTclustered | gi|1919310413|gb|CP063141.1| | 1968839 | g30057 | i0 | 97.059 | 0.15962441314554 | 34 | 0 | 15 | 1 | 123 | 155 | 302638 | 302605 | Thermoflavifilum sp. isolate Bu77 chromosome | blastn | 34 | 56.5 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Chitinophagia | Chitinophagales | Chitinophagaceae | Thermoflavifilum | Thermoflavifilum sp. | |
| 26591213 | 26591213 | PRJNA1011833_S_NODE_33981_length_201_cov_1.177215_g33561_i0 | PRJNA1011833 | 33981 | 201 | 1.177215 | 2.36620215 | Flavipsychrobacter sp. | 2307286 | Bacteria | Bacteria | 42.4 | 0.0287 | NR | MCW3123626.1 | 2307286 | g33561 | i0 | 42.2 | 0.671641791044776 | 45 | 26 | 67.2 | 0 | 145 | 11 | 190 | 234 | MCW3123626.1 O-antigen ligase protein [Flavipsychrobacter sp.] | diamond | 135 | 42.4 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Chitinophagia | Chitinophagales | Chitinophagaceae | Flavipsychrobacter | Flavipsychrobacter sp. | |
| 27635099 | 27635099 | PRJNA1011833_S_NODE_16644_length_296_cov_4.750988_g16224_i0 | PRJNA1011833 | 16644 | 296 | 4.750988 | 14.06292448 | Flavobacteriaceae bacterium | 1871037 | Bacteria | Bacteria | 100 | 1.2800000000000001e-22 | NR | MDC0637698.1 | 1871037 | g16224 | i0 | 49.5 | 2.83783783783784 | 95 | 48 | 96.3 | 0 | 296 | 12 | 293 | 387 | MDC0637698.1 proline dehydrogenase family protein [Flavobacteriaceae bacterium] | diamond | 840 | 100 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Flavobacteriia | Flavobacteriales | Flavobacteriaceae | Flavobacteriaceae bacterium | ||
| 28140416 | 28140416 | PRJNA1011833_S_NODE_38085_length_189_cov_0.986301_g37665_i0 | PRJNA1011833 | 38085 | 189 | 0.986301 | 1.86410889 | Flavobacteriia bacterium | 2044941 | Bacteria | Bacteria | 42 | 0.0306 | NR | NBX38946.1 | 2044941 | g37665 | i0 | 50 | 0.857142857142857 | 54 | 25 | 84.1 | 2 | 3 | 161 | 172 | 224 | NBX38946.1 lycopene cyclase domain-containing protein [Flavobacteriia bacterium] | diamond | 162 | 42 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Flavobacteriia | Flavobacteriia bacterium | ||||
| 29465863 | 29465863 | PRJNA1011833_S_NODE_10130_length_368_cov_8.286154_g9712_i0 | PRJNA1011833 | 10130 | 368 | 8.286154 | 30.49304672 | Roseivirga sp. | 1964215 | Bacteria | Bacteria | 51.6 | 1.1e-4 | NR | MFT6053375.1 | 1964215 | g9712 | i0 | 48 | 2.58423913043478 | 50 | 25 | 40.8 | 1 | 13 | 162 | 373 | 421 | MFT6053375.1 putative AlkP superfamily pyrophosphatase or phosphodiesterase [Roseivirga sp.] | diamond | 951 | 51.6 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Cytophagia | Cytophagales | Roseivirgaceae | Roseivirga | Roseivirga sp. | |
| 30224173 | 30224173 | PRJNA1011833_S_NODE_37712_length_190_cov_1.061224_g37292_i0 | PRJNA1011833 | 37712 | 190 | 1.061224 | 2.0163256 | Bacteroidota bacterium | 1898104 | Bacteria | Bacteria | 43.1 | 0.0139 | NR | KAA3622062.1 | 1898104 | g37292 | i0 | 41 | 0.615789473684211 | 39 | 23 | 61.6 | 0 | 5 | 121 | 734 | 772 | KAA3622062.1 MAG: hypothetical protein DWQ02_26710 [Bacteroidota bacterium] | diamond | 117 | 43.1 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Bacteroidota bacterium | |||||
| 30627236 | 30627236 | PRJNA1011833_S_NODE_20673_length_265_cov_1.824324_g20253_i0 | PRJNA1011833 | 20673 | 265 | 1.824324 | 4.8344586 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 121 | 1.2399999999999998e-29 | NR | MBL7850048.1 | 2099675 | g20253 | i0 | 66.3 | 4.77735849056604 | 80 | 27 | 90.6 | 0 | 241 | 2 | 857 | 936 | MBL7850048.1 aminomethyl-transferring glycine dehydrogenase [Cyclobacteriaceae bacterium] | diamond | 1266 | 121 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Cytophagia | Cytophagales | Cyclobacteriaceae | Cyclobacteriaceae bacterium | ||
| 31804579 | 31804579 | PRJNA1011833_S_NODE_1937_length_639_cov_52.954698_g1598_i0 | PRJNA1011833 | 1937 | 639 | 52.954698 | 338.38052022 | Candidatus Aegiribacteria sp. | 2528271 | Bacteria | Bacteria | 94.7 | 1.7400000000000003e-21 | NR | MFO8183585.1 | 2528271 | g1598 | i0 | 57.7 | 1.15023474178404 | 78 | 33 | 36.6 | 0 | 588 | 355 | 2 | 79 | MFO8183585.1 RNA-binding protein [Candidatus Aegiribacteria sp.] | diamond | 735 | 94.7 | 1 | Bacteria | FCB group | Pseudomonadati | Candidatus Aegiribacteria | Candidatus Aegiribacteria sp. | |||||
| 32839697 | 32839697 | PRJNA1011833_S_NODE_49560_length_164_cov_1.975207_g49140_i0 | PRJNA1011833 | 49560 | 164 | 1.975207 | 3.23933948 | Bacteria | 2 | Bacteria | Bacteria | 86.7 | 3.82e-18 | NR | WP_014224542.1 | 28112 | g49140 | i0 | 69.8 | 20.359756097561 | 53 | 16 | 97 | 0 | 159 | 1 | 84 | 136 | WP_014224542.1 adenosylhomocysteinase [Tannerella forsythia] | diamond | 3339 | 86.7 | 1 | Bacteria | FCB group | Pseudomonadati | Bacteroidota | Bacteroidia | Bacteroidales | Tannerellaceae | Tannerella | Tannerella forsythia |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;