RNAquarium Metadata Server
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contig_metadata

14 rows where bioproject = "PRJNA1010780" and tax_phylum = "Tubulinea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 14 ✖

tax_clade 1

bioproject 1

  • PRJNA1010780 · 14 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1429989 1429989 PRJNA1010780_S_NODE_53262_length_167_cov_3.803030_g51973_i0 PRJNA1010780 53262 167 3.80303 6.3510601 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 303 3.5e-78   NTclustered gi|89357437|gb|DQ407656.1| 5778 g51973 i0 100 1.95209580838323 164 0 98 0 4 167 173 10 Hartmannella vermiformis chitinase-like protein cluster A mRNA, partial cds blastn 326 303 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
3981519 3981519 PRJNA1010780_S_NODE_25204_length_315_cov_1.607143_g23915_i0 PRJNA1010780 25204 315 1.607143 5.06250045 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 555 1.8399999999999994e-153   NTclustered gi|66270666|gb|AY950658.1| 5778 g23915 i0 98.413 1 315 5 100 0 1 315 502 188 Hartmannella vermiformis Nop58p mRNA, partial cds blastn 315 555 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
3981586 3981586 PRJNA1010780_S_NODE_41044_length_203_cov_1.488095_g39755_i0 PRJNA1010780 41044 203 1.488095 3.02083285 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 364 2e-96   NTclustered gi|88601165|gb|DQ384330.1| 5778 g39755 i0 99.015 2 203 2 100 0 1 203 430 228 Hartmannella vermiformis succinyl-diaminopimelate desuccinylase-like protein B mRNA, partial cds blastn 406 364 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
6533330 6533330 PRJNA1010780_S_NODE_41426_length_201_cov_2.343373_g40137_i0 PRJNA1010780 41426 201 2.343373 4.71017973 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 329 7.21e-86   NTclustered gi|423292048|gb|JQ519470.1| 5778 g40137 i0 97.895 47.6119402985075 190 4 95 0 12 201 1 190 Vermamoeba vermiformis clone JG10.132_b5 alpha tubulin gene, partial cds blastn 9570 329 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
7807781 7807781 PRJNA1010780_S_NODE_61647_length_152_cov_3.025641_g60358_i0 PRJNA1010780 61647 152 3.025641 4.59897432 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 243 6.87e-60   NTclustered gi|423292048|gb|JQ519470.1| 5778 g60358 i0 95.973 18.4078947368421 149 6 98 0 4 152 468 320 Vermamoeba vermiformis clone JG10.132_b5 alpha tubulin gene, partial cds blastn 2798 243 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
12908831 12908831 PRJNA1010780_S_NODE_33871_length_237_cov_2.386139_g32582_i0 PRJNA1010780 33871 237 2.386139 5.65514943 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 228 3.2899999999999986e-55   NTclustered gi|89357439|gb|DQ407657.1| 5778 g32582 i0 98.45 1.08860759493671 129 2 54 0 1 129 129 1 Hartmannella vermiformis chitinase-like protein cluster B mRNA, partial cds blastn 258 228 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
14183804 14183804 PRJNA1010780_S_NODE_41272_length_202_cov_1.712575_g39983_i0 PRJNA1010780 41272 202 1.712575 3.4594015 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 374 3.3e-99   NTclustered gi|300078496|gb|GU001158.1| 5778 g39983 i0 100 3.00990099009901 202 0 100 0 1 202 2938 3139 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 608 374 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
16732057 16732057 PRJNA1010780_S_NODE_41314_length_202_cov_1.526946_g40025_i0 PRJNA1010780 41314 202 1.526946 3.08443092 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 368 1.54e-97   NTclustered gi|300078496|gb|GU001158.1| 5778 g40025 i0 99.505 24.7277227722772 202 1 100 0 1 202 4354 4153 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 4995 368 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
18006828 18006828 PRJNA1010780_S_NODE_20555_length_390_cov_3.473239_g19266_i0 PRJNA1010780 20555 390 3.473239 13.5456321 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 416 1.15e-111   NTclustered gi|89357437|gb|DQ407656.1| 5778 g19266 i0 97.531 1.24615384615385 243 6 62 0 1 243 169 411 Hartmannella vermiformis chitinase-like protein cluster A mRNA, partial cds blastn 486 416 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
19280755 19280755 PRJNA1010780_S_NODE_60016_length_155_cov_1.625000_g58727_i0 PRJNA1010780 60016 155 1.625 2.51875 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 287 3.21e-73   NTclustered gi|88601207|gb|DQ384272.1| 5778 g58727 i0 100 1 155 0 100 0 1 155 167 321 Hartmannella vermiformis unknown mRNA blastn 155 287 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
23107501 23107501 PRJNA1010780_S_NODE_53419_length_167_cov_1.962121_g52130_i0 PRJNA1010780 53419 167 1.962121 3.27674207 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 292 7.58e-75   NTclustered gi|423292048|gb|JQ519470.1| 5778 g52130 i0 98.78 28.8622754491018 164 2 98 0 1 164 639 802 Vermamoeba vermiformis clone JG10.132_b5 alpha tubulin gene, partial cds blastn 4820 292 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
23107522 23107522 PRJNA1010780_S_NODE_58159_length_158_cov_1.829268_g56870_i0 PRJNA1010780 58159 158 1.829268 2.89024344 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 243 7.219999999999999e-60   NTclustered gi|421976355|gb|JQ519494.1| 5778 g56870 i0 94.304 1 158 9 100 0 1 158 405 248 Vermamoeba vermiformis clone JG10.150_g4 elongation factor 2 alpha gene, partial cds blastn 158 243 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
23107575 23107575 PRJNA1010780_S_NODE_8759_length_855_cov_10.417073_g7895_i0 PRJNA1010780 8759 855 10.417073 89.06597415 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 1399 0   NTclustered gi|62910949|gb|AY925001.1| 5778 g7895 i0 99.608 3.0374269005848 766 3 90 0 1 766 766 1 Hartmannella vermiformis Rpl7A mRNA, partial cds blastn 2597 1399 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
30824438 30824438 PRJNA1010780_S_NODE_24874_length_319_cov_1.823944_g23585_i0 PRJNA1010780 24874 319 1.823944 5.81838136 Amoeba proteus 5775 Tubulinea other_Eukaryota 65.9 4.14e-10   NR AKN09692.1 5775 g23585 i0 35.2 0.987460815047022 105 66 96.9 1 1 309 152 256 AKN09692.1 Tom40 [Amoeba proteus] diamond 315 65.9 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;