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contig_metadata

32 rows where bioproject = "PRJNA1010780", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 32 ✖

tax_kingdom 1

  • Pseudomonadati · 32 ✖

bioproject 1

  • PRJNA1010780 · 32 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11633784 11633784 PRJNA1010780_S_NODE_43090_length_195_cov_2.100000_g41801_i0 PRJNA1010780 43090 195 2.1 4.095 Halobacteriovorax sp. BALOs_7 2109558 Bacteria Bacteria 122 1.2699999999999999e-23   NTclustered gi|1486380477|gb|CP027772.1| 2109558 g41801 i0 82.27 6.29230769230769 141 25 72 0 1 141 211668 211808 Halobacteriovorax sp. BALOs_7 chromosome, complete genome blastn 1227 122 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Halobacteriovoraceae Halobacteriovorax Halobacteriovorax sp. BALOs_7
23953874 23953874 PRJNA1010780_S_NODE_31679_length_252_cov_1.953917_g30390_i0 PRJNA1010780 31679 252 1.953917 4.92387084 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 150 2.63e-41   NR MCB0371130.1 2053517 g30390 i0 85.5 0.988095238095238 83 12 98.8 0 1 249 143 225 MCB0371130.1 ATP-grasp domain-containing protein [Bdellovibrionales bacterium] diamond 249 150 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
26749301 26749301 PRJNA1010780_S_NODE_39261_length_210_cov_1.834286_g37972_i0 PRJNA1010780 39261 210 1.834286 3.8520006 Halobacteriovoraceae bacterium 2026745 Bacteria Bacteria 57 2.02e-7   NR MCB9093356.1 2026745 g37972 i0 44.9 3.94285714285714 69 38 98.6 0 208 2 110 178 MCB9093356.1 site-specific integrase [Halobacteriovoraceae bacterium] diamond 828 57 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Halobacteriovoraceae   Halobacteriovoraceae bacterium
26876745 26876745 PRJNA1010780_S_NODE_7581_length_949_cov_10.586433_g6820_i0 PRJNA1010780 7581 949 10.586433 100.46524917 Oligoflexales bacterium 2687297 Bacteria Bacteria 53.5 7.59e-4   NR MBF0441833.1 2687297 g6820 i0 30.4 0.354056902002107 112 61 35.1 4 759 427 424 519 MBF0441833.1 response regulator [Oligoflexales bacterium] diamond 336 53.5 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Oligoflexales     Oligoflexales bacterium
27058672 27058672 PRJNA1010780_S_NODE_29002_length_273_cov_3.642857_g27713_i0 PRJNA1010780 29002 273 3.642857 9.94499961 Pseudomonadati 3379134 Bacteria Bacteria 90.5 5.83e-19   NR MBC7692104.1 2599941 g27713 i0 52.7 4.65934065934066 74 35 81.3 0 50 271 332 405 MBC7692104.1 hypothetical protein [Oligoflexia bacterium] diamond 1272 90.5 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia       Oligoflexia bacterium
27445760 27445760 PRJNA1010780_S_NODE_46463_length_184_cov_2.738255_g45174_i0 PRJNA1010780 46463 184 2.738255 5.0383892 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 77.8 7.5e-15   NR HAZ13310.1 2053517 g45174 i0 61.8 1.79347826086957 55 21 89.7 0 1 165 419 473 HAZ13310.1 hypothetical protein [Bdellovibrionales bacterium] diamond 330 77.8 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
27571753 27571753 PRJNA1010780_S_NODE_47024_length_183_cov_1.425676_g45735_i0 PRJNA1010780 47024 183 1.425676 2.60898708 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 67.8 2.35e-11   NR MCB0371130.1 2053517 g45735 i0 52.5 0.967213114754098 59 28 96.7 0 5 181 330 388 MCB0371130.1 ATP-grasp domain-containing protein [Bdellovibrionales bacterium] diamond 177 67.8 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
27918958 27918958 PRJNA1010780_S_NODE_25345_length_313_cov_1.751799_g24056_i0 PRJNA1010780 25345 313 1.751799 5.48313087 Halobacteriovorax sp. GB3 2719615 Bacteria Bacteria 43.5 0.045   NR WP_273871843.1 2719615 g24056 i0 36.5 0.814696485623003 85 49 76.7 3 308 69 202 286 WP_273871843.1 tetratricopeptide repeat protein [Halobacteriovorax sp. GB3] diamond 255 43.5 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Halobacteriovoraceae Halobacteriovorax Halobacteriovorax sp. GB3
28014004 28014004 PRJNA1010780_S_NODE_47645_length_181_cov_1.958904_g46356_i0 PRJNA1010780 47645 181 1.958904 3.54561624 Oligoflexia bacterium 2599941 Bacteria Bacteria 63.5 7.5e-10   NR NOY25519.1 2599941 g46356 i0 43.8 3.18232044198895 64 32 99.4 1 2 181 41 104 NOY25519.1 isochorismatase family protein [Oligoflexia bacterium] diamond 576 63.5 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia       Oligoflexia bacterium
28140352 28140352 PRJNA1010780_S_NODE_40505_length_205_cov_1.494118_g39216_i0 PRJNA1010780 40505 205 1.494118 3.0629419 Bacteriovorax stolpii 960 Bacteria Bacteria 42.7 0.0221   NR WP_102245312.1 960 g39216 i0 41.4 1.71219512195122 58 29 77.6 1 7 165 108 165 WP_102245312.1 flagella basal body P-ring formation protein FlgA [Bacteriovorax stolpii] diamond 351 42.7 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii
28606127 28606127 PRJNA1010780_S_NODE_8907_length_845_cov_5.838272_g8032_i0 PRJNA1010780 8907 845 5.838272 49.3333984 Bdellovibrionota 3018035 Bacteria Bacteria 372 3.81e-126   NR WP_142409471.1 960 g8032 i0 77.2 3.42248520710059 241 55 85.6 0 841 119 90 330 WP_142409471.1 adenosine kinase [Bacteriovorax stolpii] diamond 2892 374 0.994652406417112 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii
28669417 28669417 PRJNA1010780_S_NODE_9347_length_811_cov_7.963918_g8444_i0 PRJNA1010780 9347 811 7.963918 64.58737498 Bacteria 2 Bacteria Bacteria 259 1.52e-82   NR PWU21281.1 28201 g8444 i0 55.4 19.1245376078915 231 95 84.7 4 100 786 61 285 PWU21281.1 MAG: D-alanyl-D-alanine dipeptidase [Bdellovibrio sp.] diamond 15510 261 0.992337164750958 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp.
28708543 28708543 PRJNA1010780_S_NODE_25887_length_306_cov_2.948339_g24598_i0 PRJNA1010780 25887 306 2.948339 9.02191734 Oligoflexia bacterium 2599941 Bacteria Bacteria 82 9.73e-16   NR HRK01622.1 2599941 g24598 i0 50 2 102 44 100 6 1 306 197 291 HRK01622.1 hypothetical protein [Oligoflexia bacterium] diamond 612 82 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia       Oligoflexia bacterium
28708559 28708559 PRJNA1010780_S_NODE_33247_length_241_cov_1.902913_g31958_i0 PRJNA1010780 33247 241 1.902913 4.58602033 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 100 8.95e-25   NR MCB0371245.1 2053517 g31958 i0 55 0.995850622406639 80 35 99.6 1 2 241 23 101 MCB0371245.1 tetratricopeptide repeat protein [Bdellovibrionales bacterium] diamond 240 100 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
29016955 29016955 PRJNA1010780_S_NODE_7868_length_923_cov_43.104730_g4488_i1 PRJNA1010780 7868 923 43.104730000000004 397.8566579 Bacteriovorax 146784 Bacteria Bacteria 375 6.27e-127   NR WP_142409471.1 960 g4488 i1 70.3 4.96316359696641 256 76 83.2 0 922 155 75 330 WP_142409471.1 adenosine kinase [Bacteriovorax stolpii] diamond 4581 375 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii
29213851 29213851 PRJNA1010780_S_NODE_40409_length_205_cov_2.011765_g39120_i0 PRJNA1010780 40409 205 2.011765 4.12411825 Halobacteriovoraceae bacterium 2026745 Bacteria Bacteria 79.3 2.5e-15   NR MAF78183.1 2026745 g39120 i0 49.3 2.94146341463415 67 26 98 1 3 203 68 126 MAF78183.1 alkaline phosphatase family protein [Halobacteriovoraceae bacterium] diamond 603 79.3 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Halobacteriovoraceae   Halobacteriovoraceae bacterium
29655237 29655237 PRJNA1010780_S_NODE_41170_length_202_cov_2.299401_g39881_i0 PRJNA1010780 41170 202 2.299401 4.64479002 Bdellovibrionia bacterium 3034169 Bacteria Bacteria 48.9 1.39e-4   NR MEO5971564.1 3034169 g39881 i0 43.6 0.816831683168317 55 30 81.7 1 6 170 405 458 MEO5971564.1 hypothetical protein [Bdellovibrionia bacterium] diamond 165 48.9 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia       Bdellovibrionia bacterium
29655260 29655260 PRJNA1010780_S_NODE_52730_length_169_cov_1.097015_g51441_i0 PRJNA1010780 52730 169 1.097015 1.85395535 Micavibrio sp. 2024841 Bacteria Bacteria 51.2 8.23e-6   NR MBX2833971.1 2024841 g51441 i0 43.1 1.02958579881657 58 26 95.9 2 163 2 40 94 MBX2833971.1 alpha-ketoglutarate-dependent dioxygenase AlkB [Micavibrio sp.] diamond 174 51.2 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio sp.
29750003 29750003 PRJNA1010780_S_NODE_11171_length_704_cov_38.648729_g10150_i0 PRJNA1010780 11171 704 38.648729 272.08705216 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 142 1.31e-38   NR MCB0369154.1 2053517 g10150 i0 54.9 1.30823863636364 142 58 60.5 2 120 545 12 147 MCB0369154.1 C39 family peptidase [Bdellovibrionales bacterium] diamond 921 142 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
30351117 30351117 PRJNA1010780_S_NODE_4252_length_1318_cov_5.046765_g3830_i0 PRJNA1010780 4252 1318 5.046765 66.5163627 Micavibrio aeruginosavorus 349221 Bacteria Bacteria 52.8 0.00266   NR PZO80902.1 349221 g3830 i0 32.2 0.325493171471927 143 79 30.5 6 67 468 357 490 PZO80902.1 MAG: hypothetical protein DI626_11095, partial [Micavibrio aeruginosavorus] diamond 429 52.8 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus
30658945 30658945 PRJNA1010780_S_NODE_28513_length_278_cov_2.526749_g27224_i0 PRJNA1010780 28513 278 2.526749 7.02436222 Silvanigrellaceae 2024974 Bacteria Bacteria 46.2 0.00327   NR WP_153418097.1 2499159 g27224 i0 40.7 1.86690647482014 59 31 59.4 1 112 276 322 380 WP_153418097.1 response regulator [Silvanigrella paludirubra] diamond 519 46.2 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Silvanigrellales Silvanigrellaceae Silvanigrella Silvanigrella paludirubra
30690497 30690497 PRJNA1010780_S_NODE_61053_length_153_cov_2.296610_g59764_i0 PRJNA1010780 61053 153 2.29661 3.5138133 Peredibacter 263370 Bacteria Bacteria 63.5 4.2e-10   NR WP_321393724.1 28202 g59764 i0 58 1.96078431372549 50 21 98 0 2 151 196 245 WP_321393724.1 KpsF/GutQ family sugar-phosphate isomerase [Peredibacter starrii] diamond 300 63.5 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
30943465 30943465 PRJNA1010780_S_NODE_52274_length_170_cov_1.088889_g50985_i0 PRJNA1010780 52274 170 1.088889 1.8511113 Bdellovibrionota 3018035 Bacteria Bacteria 52.4 5.31e-6   NR HEY8271141.1 2026715 g50985 i0 47.8 2.66470588235294 46 24 81.2 0 1 138 104 149 HEY8271141.1 alpha/beta hydrolase [Pseudobdellovibrionaceae bacterium] diamond 453 52.8 0.992424242424242 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
30951030 30951030 PRJNA1010780_S_NODE_15034_length_541_cov_5.984190_g13824_i0 PRJNA1010780 15034 541 5.98419 32.3744679 Oligoflexus sp. 1971216 Bacteria Bacteria 46.2 0.0361   NR WP_324959531.1 1971216 g13824 i0 45.7 0.255083179297597 46 25 25.5 0 409 272 534 579 WP_324959531.1 alkaline phosphatase D family protein [Oligoflexus sp.] diamond 138 46.2 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Oligoflexales Oligoflexaceae Oligoflexus Oligoflexus sp.
31235146 31235146 PRJNA1010780_S_NODE_37575_length_217_cov_3.104396_g36286_i0 PRJNA1010780 37575 217 3.104396 6.73653932 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 74.7 6.85e-14   NR MCB0393755.1 2053517 g36286 i0 49.3 3.7741935483871 69 34 95.4 1 9 215 62 129 MCB0393755.1 hypothetical protein [Bdellovibrionales bacterium] diamond 819 74.7 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
31290819 31290819 PRJNA1010780_S_NODE_12135_length_657_cov_3.543408_g11057_i0 PRJNA1010780 12135 657 3.543408 23.28019056 root 1 Root_unresolved Root_unresolved 104 1.73e-22   NR WP_063243436.1 959 g11057 i0 39.5 5.29680365296804 177 83 76.3 8 643 143 193 355 WP_063243436.1 PQQ-dependent sugar dehydrogenase [Bdellovibrio bacteriovorus] diamond 3480 105 0.990476190476191 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
31677997 31677997 PRJNA1010780_S_NODE_37697_length_217_cov_1.818681_g36408_i0 PRJNA1010780 37697 217 1.818681 3.94653777 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 75.5 6.55e-15   NR MCB0371038.1 2053517 g36408 i0 45.7 0.967741935483871 70 38 96.8 0 212 3 78 147 MCB0371038.1 cation transporting ATPase C-terminal domain-containing protein [Bdellovibrionales bacterium] diamond 210 75.5 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
31772885 31772885 PRJNA1010780_S_NODE_33957_length_237_cov_1.173267_g32668_i0 PRJNA1010780 33957 237 1.173267 2.78064279 Bdellovibrio sp. 28201 Bacteria Bacteria 42.7 0.0325   NR MFN7729899.1 28201 g32668 i0 32.4 0.89873417721519 71 45 86.1 1 204 1 69 139 MFN7729899.1 diaminopimelate epimerase [Bdellovibrio sp.] diamond 213 42.7 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp.
31867743 31867743 PRJNA1010780_S_NODE_32797_length_244_cov_2.282297_g31508_i0 PRJNA1010780 32797 244 2.282297 5.56880468 Bacteriovoracia bacterium 3058048 Bacteria Bacteria 80.1 1.63e-15   NR MFP5457183.1 3058048 g31508 i0 50 0.983606557377049 80 37 98.4 1 2 241 97 173 MFP5457183.1 DNA polymerase IV [Bacteriovoracia bacterium] diamond 240 80.1 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia       Bacteriovoracia bacterium
32018504 32018504 PRJNA1010780_S_NODE_4978_length_1217_cov_47.281726_g4488_i0 PRJNA1010780 4978 1217 47.281726 575.41860542 Bacteriovorax 146784 Bacteria Bacteria 473 6.459999999999999e-164   NR WP_142409471.1 960 g4488 i0 70.6 4.05012325390304 330 97 81.3 0 74 1063 1 330 WP_142409471.1 adenosine kinase [Bacteriovorax stolpii] diamond 4929 473 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii
32405887 32405887 PRJNA1010780_S_NODE_40259_length_206_cov_1.403509_g38970_i0 PRJNA1010780 40259 206 1.403509 2.89122854 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 89.4 2.36e-19   NR MBQ49208.1 2026715 g38970 i0 69.6 3.37864077669903 56 17 81.6 0 8 175 27 82 MBQ49208.1 glutathione-dependent reductase [Pseudobdellovibrionaceae bacterium] diamond 696 89.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
32469258 32469258 PRJNA1010780_S_NODE_27279_length_290_cov_7.337255_g25990_i0 PRJNA1010780 27279 290 7.337255 21.2780395 Bacteriovorax sp. 2608087 Bacteria Bacteria 158 2.95e-45   NR MBP9680396.1 2608087 g25990 i0 78.1 1.98620689655172 96 21 99.3 0 3 290 16 111 MBP9680396.1 adenosine kinase [Bacteriovorax sp.] diamond 576 158 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;