RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA1010780", tax_clade = "Methanomada group" and tax_kingdom = "Methanobacteriati"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Methanobacteriati · 8 ✖

tax_clade 1

  • Methanomada group · 8 ✖

bioproject 1

  • PRJNA1010780 · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23107396 23107396 PRJNA1010780_S_NODE_27799_length_285_cov_2.404000_g26510_i0 PRJNA1010780 27799 285 2.404 6.8514 Methanobrevibacter sp. TLL-48-HuF1 2870563 Archaea Archaea 56.5 0.002   NTclustered gi|2246976648|gb|CP081485.1| 2870563 g26510 i0 100 0.4 30 0 11 0 86 115 73919 73890 Methanobrevibacter sp. TLL-48-HuF1 chromosome, complete genome blastn 114 56.5 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp. TLL-48-HuF1
27160754 27160754 PRJNA1010780_S_NODE_35162_length_230_cov_1.456410_g33873_i0 PRJNA1010780 35162 230 1.45641 3.349743 Methanobrevibacter millerae 230361 Archaea Archaea 44.3 0.00806   NR MBE6510136.1 230361 g33873 i0 30.5 0.769565217391304 59 41 77 0 24 200 139 197 MBE6510136.1 4Fe-4S ferredoxin [Methanobrevibacter millerae] diamond 177 44.3 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter millerae
27911249 27911249 PRJNA1010780_S_NODE_42145_length_199_cov_1.280488_g40856_i0 PRJNA1010780 42145 199 1.280488 2.54817112 root 1 Root_unresolved Root_unresolved 41.6 0.028   NR WP_345895079.1 66852 g40856 i0 37.3 1.89949748743719 67 40 98 2 195 1 56 122 WP_345895079.1 hypothetical protein [Methanobrevibacter sp.] diamond 378 42 0.990476190476191 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
28708551 28708551 PRJNA1010780_S_NODE_30007_length_265_cov_1.895652_g28718_i0 PRJNA1010780 30007 265 1.895652 5.0234778 Methanobrevibacter smithii 2173 Archaea Archaea 43.5 0.0266   NR WP_400223010.1 2173 g28718 i0 32.2 8.83018867924528 90 55 97.4 3 260 3 2052 2139 WP_400223010.1 Ig-like domain repeat protein, partial [Methanobrevibacter smithii] diamond 2340 43.5 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
28802846 28802846 PRJNA1010780_S_NODE_28408_length_279_cov_2.504098_g27119_i0 PRJNA1010780 28408 279 2.504098 6.98643342 Methanobrevibacter sp. 66852 Archaea Archaea 103 2.2399999999999998e-23   NR WP_406531486.1 66852 g27119 i0 57 2.82795698924731 86 37 92.5 0 263 6 443 528 WP_406531486.1 hypothetical protein [Methanobrevibacter sp.] diamond 789 103 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
28961233 28961233 PRJNA1010780_S_NODE_22008_length_362_cov_3.480122_g20719_i0 PRJNA1010780 22008 362 3.480122 12.59804164 Methanobrevibacter filiformis 55758 Archaea Archaea 43.9 0.043   NR WP_066970950.1 55758 g20719 i0 34.3 0.580110497237569 70 46 58 0 356 147 168 237 WP_066970950.1 MIP/aquaporin family protein [Methanobrevibacter filiformis] diamond 210 43.9 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter filiformis
32721455 32721455 PRJNA1010780_S_NODE_45940_length_186_cov_1.675497_g44651_i0 PRJNA1010780 45940 186 1.675497 3.11642442 Methanobrevibacter sp. A27 1860099 Archaea Archaea 44.7 0.0034   NR WP_369815347.1 1860099 g44651 i0 45.9 0.983870967741935 61 32 96.8 1 185 6 156 216 WP_369815347.1 tetratricopeptide repeat protein [Methanobrevibacter sp. A27] diamond 183 44.7 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp. A27
32878810 32878810 PRJNA1010780_S_NODE_46640_length_184_cov_1.604027_g45351_i0 PRJNA1010780 46640 184 1.604027 2.95140968 Methanosphaera sp. 2666342 Archaea Archaea 46.6 7.13e-4   NR MEE3419417.1 2666342 g45351 i0 33.3 1.95652173913043 60 40 97.8 0 3 182 56 115 MEE3419417.1 PX and WD40 repeat domain-containing protein [Methanosphaera sp.] diamond 360 46.6 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;