RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1010662" and tax_phylum = "Thermotogota"

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tax_superkingdom 1

tax_phylum 1

  • Thermotogota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1010662 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30824373 30824373 PRJNA1010662_P_NODE_11394_length_175_cov_1.579365_g11335_i0 PRJNA1010662 11394 175 1.579365 2.76388875 Thermotoga sp. Ku-13t 1755813 Bacteria Bacteria 69.7 6.73e-13   NR WP_165275142.1 1755813 g11335 i0 64.7 0.874285714285714 51 18 87.4 0 156 4 119 169 WP_165275142.1 macro domain-containing protein [Thermotoga sp. Ku-13t] diamond 153 69.7 1 Bacteria   Thermotogati Thermotogota Thermotogae Thermotogales Thermotogaceae Thermotoga Thermotoga sp. Ku-13t
31164159 31164159 PRJNA1010662_P_NODE_555_length_667_cov_2.281553_g504_i0 PRJNA1010662 555 667 2.281553 15.21795851 root 1 Root_unresolved Root_unresolved 103 2.5e-24   NR WP_128080917.1 2335 g504 i0 45.6 5.84257871064468 125 60 55.3 4 539 171 6 124 WP_128080917.1 MULTISPECIES: glycine cleavage system protein GcvH [Thermotoga] diamond 3897 104 0.990384615384615 Bacteria   Thermotogati Thermotogota Thermotogae Thermotogales Thermotogaceae Thermotoga  
32500825 32500825 PRJNA1010662_P_NODE_16299_length_163_cov_0.877193_g16240_i0 PRJNA1010662 16299 163 0.877193 1.42982459 Thermotoga sp. KOL6 126741 Bacteria Bacteria 59.3 1.8e-8   NR WP_101510730.1 126741 g16240 i0 51.9 2.98159509202454 54 23 99.4 1 1 162 467 517 WP_101510730.1 AAA family ATPase [Thermotoga sp. KOL6] diamond 486 59.3 1 Bacteria   Thermotogati Thermotogota Thermotogae Thermotogales Thermotogaceae Thermotoga Thermotoga sp. KOL6

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;