contig_metadata
8 rows where bioproject = "PRJNA1010662", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15457483 | 15457483 | PRJNA1010662_P_NODE_16573_length_162_cov_0.920354_g16514_i0 | PRJNA1010662 | 16573 | 162 | 0.920354 | 1.49097348 | Bdellovibrio sp. HCB288 | 3394355 | Bacteria | Bacteria | 52.8 | 0.013 | NTclustered | gi|2895994964|gb|CP178619.1| | 3394355 | g16514 | i0 | 100 | 0.172839506172839 | 28 | 0 | 17 | 0 | 42 | 69 | 2095401 | 2095428 | Bdellovibrio sp. HCB288 chromosome, complete genome | blastn | 28 | 52.8 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Bdellovibrio | Bdellovibrio sp. HCB288 | ||
| 26622906 | 26622906 | PRJNA1010662_P_NODE_7181_length_209_cov_1.512500_g7122_i0 | PRJNA1010662 | 7181 | 209 | 1.5125 | 3.161125 | Pseudobdellovibrio exovorus | 453816 | Bacteria | Bacteria | 65.1 | 3.12e-10 | NR | WP_015468752.1 | 453816 | g7122 | i0 | 52.2 | 0.990430622009569 | 69 | 28 | 91.9 | 4 | 14 | 205 | 333 | 401 | WP_015468752.1 thrombospondin type-1 domain-containing protein [Pseudobdellovibrio exovorus] | diamond | 207 | 65.1 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Pseudobdellovibrio | Pseudobdellovibrio exovorus | ||
| 27729899 | 27729899 | PRJNA1010662_P_NODE_2484_length_325_cov_2.336957_g2425_i0 | PRJNA1010662 | 2484 | 325 | 2.336957 | 7.59511025 | Bacteriovoracaceae bacterium | 2081706 | Bacteria | Bacteria | 65.9 | 5.32e-10 | NR | MDH4467552.1 | 2081706 | g2425 | i0 | 48.5 | 1.25538461538462 | 66 | 32 | 60.9 | 1 | 244 | 47 | 192 | 255 | MDH4467552.1 signal peptide peptidase SppA [Bacteriovoracaceae bacterium] | diamond | 408 | 65.9 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bacteriovoracia | Bacteriovoracales | Bacteriovoracaceae | Bacteriovoracaceae bacterium | |||
| 30097612 | 30097612 | PRJNA1010662_P_NODE_16072_length_163_cov_0.912281_g16013_i0 | PRJNA1010662 | 16072 | 163 | 0.912281 | 1.48701803 | Bdellovibrionota bacterium | 3034175 | Bacteria | Bacteria | 55.8 | 4.43e-8 | NR | MES2528294.1 | 3034175 | g16013 | i0 | 87.1 | 1.12269938650307 | 31 | 3 | 57.1 | 1 | 162 | 70 | 97 | 126 | MES2528294.1 4Fe-4S dicluster domain-containing protein [Bdellovibrionota bacterium] | diamond | 183 | 55.8 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionota bacterium | ||||||
| 30287697 | 30287697 | PRJNA1010662_P_NODE_6152_length_221_cov_1.662791_g6093_i0 | PRJNA1010662 | 6152 | 221 | 1.662791 | 3.67476811 | Bdellovibrionales bacterium | 2053517 | Bacteria | Bacteria | 57.8 | 4.56e-8 | NR | MCB0371038.1 | 2053517 | g6093 | i0 | 46 | 0.678733031674208 | 50 | 27 | 67.9 | 0 | 220 | 71 | 134 | 183 | MCB0371038.1 cation transporting ATPase C-terminal domain-containing protein [Bdellovibrionales bacterium] | diamond | 150 | 57.8 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Bdellovibrionales bacterium | ||||
| 30722023 | 30722023 | PRJNA1010662_P_NODE_8414_length_197_cov_1.054054_g8355_i0 | PRJNA1010662 | 8414 | 197 | 1.054054 | 2.07648638 | root | 1 | Root_unresolved | Root_unresolved | 79.7 | 6.69e-16 | NR | RME14072.1 | 28201 | g8355 | i0 | 62.5 | 6.86802030456853 | 64 | 23 | 97.5 | 1 | 3 | 194 | 94 | 156 | RME14072.1 MAG: pyridoxal-phosphate dependent enzyme, partial [Bdellovibrio sp.] | diamond | 1353 | 80.5 | 0.990062111801242 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Bdellovibrio | Bdellovibrio sp. | ||
| 30855966 | 30855966 | PRJNA1010662_P_NODE_14874_length_165_cov_0.887931_g14815_i0 | PRJNA1010662 | 14874 | 165 | 0.887931 | 1.46508615 | Bdellovibrionales bacterium | 2053517 | Bacteria | Bacteria | 65.5 | 8.98e-11 | NR | MBS1962890.1 | 2053517 | g14815 | i0 | 57.4 | 0.981818181818182 | 54 | 23 | 98.2 | 0 | 164 | 3 | 34 | 87 | MBS1962890.1 succinylglutamate desuccinylase/aspartoacylase family protein [Bdellovibrionales bacterium] | diamond | 162 | 65.5 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Bdellovibrionales bacterium | ||||
| 31330029 | 31330029 | PRJNA1010662_P_NODE_14896_length_165_cov_0.887931_g14837_i0 | PRJNA1010662 | 14896 | 165 | 0.887931 | 1.46508615 | Pseudobdellovibrio exovorus | 453816 | Bacteria | Bacteria | 58.2 | 4.6e-8 | NR | WP_015468752.1 | 453816 | g14837 | i0 | 49.1 | 0.963636363636364 | 53 | 27 | 96.4 | 0 | 161 | 3 | 348 | 400 | WP_015468752.1 thrombospondin type-1 domain-containing protein [Pseudobdellovibrio exovorus] | diamond | 159 | 58.2 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Pseudobdellovibrio | Pseudobdellovibrio exovorus |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;