RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

24 rows where bioproject = "PRJNA1010662", tax_kingdom = "Pseudomonadati" and tax_phylum = "Acidobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 24 ✖

tax_kingdom 1

  • Pseudomonadati · 24 ✖

bioproject 1

  • PRJNA1010662 · 24 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2705104 2705104 PRJNA1010662_P_NODE_16243_length_163_cov_0.894737_g16184_i0 PRJNA1010662 16243 163 0.894737 1.45842131 Bryobacterales bacterium F-183 2802972 Bacteria Bacteria 56.5 0.001   NTclustered gi|2131941663|dbj|AP025252.1| 2802972 g16184 i0 100 0.184049079754601 30 0 18 0 40 69 5605994 5606023 Bryobacterales bacterium F-183 DNA, nearly complete genome blastn 30 56.5 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales     Bryobacterales bacterium F-183
4829488 4829488 PRJNA1010662_S_NODE_4024_length_171_cov_2.929688_g3979_i0 PRJNA1010662 4024 171 2.929688 5.00976648 Bacteria 2 Bacteria Bacteria 292 7.75e-75   NTclustered gi|2874254027|emb|OY970352.1| 171953 g3979 i0 97.647 135.292397660819 170 4 99 0 1 170 2367530 2367361 MAG: uncultured Acidobacteriota bacterium isolate MFD01916.bin.c.5 genome assembly, chromosome: 1 blastn 23135 292 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
6533115 6533115 PRJNA1010662_P_NODE_6986_length_211_cov_1.592593_g6927_i0 PRJNA1010662 6986 211 1.592593 3.36037123 Acidobacterium capsulatum 33075 Bacteria Bacteria 74.7 1.27e-13   NR WP_169305926.1 33075 g6927 i0 49.3 0.981042654028436 69 34 98.1 1 209 3 202 269 WP_169305926.1 cholesterol oxidase substrate-binding domain-containing protein [Acidobacterium capsulatum] diamond 207 74.7 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Acidobacterium Acidobacterium capsulatum
6533178 6533178 PRJNA1010662_S_NODE_4646_length_161_cov_4.389831_g4601_i0 PRJNA1010662 4646 161 4.389831 7.06762791 Chloracidobacterium validum 2821543 Bacteria Bacteria 241 2.66e-59   NTclustered gi|2033659757|gb|CP072648.1| 2821543 g4601 i0 93.789 31.6211180124224 161 8 100 1 1 161 106000 105842 Chloracidobacterium validum strain BV2-C chromosome 1, complete sequence blastn 5091 241 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Chloracidobacterium Chloracidobacterium validum
7807531 7807531 PRJNA1010662_S_NODE_3687_length_178_cov_1.422222_g3642_i0 PRJNA1010662 3687 178 1.422222 2.53155516 Thermoanaerobaculum sp. 2510637 Bacteria Bacteria 52.8 0.015   NTclustered gi|2314712957|dbj|AP024672.1| 2510637 g3642 i0 100 0.157303370786517 28 0 16 0 69 96 2710639 2710612 MAG: Thermoanaerobaculum sp. KatS3mg007 DNA, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia Thermoanaerobaculales Thermoanaerobaculaceae Thermoanaerobaculum Thermoanaerobaculum sp.
26646915 26646915 PRJNA1010662_P_NODE_16901_length_162_cov_0.902655_g16842_i0 PRJNA1010662 16901 162 0.902655 1.4623011 Pseudomonadati 3379134 Bacteria Bacteria 90.1 2.16e-19   NR MBL8191679.1 1978231 g16842 i0 75 3.7962962962963 52 13 96.3 0 160 5 387 438 MBL8191679.1 NADP-dependent isocitrate dehydrogenase [Acidobacteriota bacterium] diamond 615 90.1 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
27508697 27508697 PRJNA1010662_P_NODE_9403_length_189_cov_1.071429_g9344_i0 PRJNA1010662 9403 189 1.071429 2.02500081 Granulicella aggregans 474949 Bacteria Bacteria 43.5 0.00997   NR WP_184217190.1 474949 g9344 i0 50 0.761904761904762 48 24 76.2 0 37 180 71 118 WP_184217190.1 glycosyl hydrolase family 79 C-terminal domain-containing protein [Granulicella aggregans] diamond 144 43.5 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Granulicella Granulicella aggregans
27603450 27603450 PRJNA1010662_P_NODE_17164_length_158_cov_2.183486_g17105_i0 PRJNA1010662 17164 158 2.183486 3.44990788 Terracidiphilus sp. 1964191 Bacteria Bacteria 62.4 2.18e-10   NR MDR3741807.1 1964191 g17105 i0 56.6 1.00632911392405 53 21 96.8 1 158 6 86 138 MDR3741807.1 hypothetical protein [Terracidiphilus sp.] diamond 159 62.4 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Terracidiphilus Terracidiphilus sp.
27824423 27824423 PRJNA1010662_P_NODE_9624_length_187_cov_1.478261_g9565_i0 PRJNA1010662 9624 187 1.478261 2.76434807 Acidobacteriota bacterium 1978231 Bacteria Bacteria 43.5 9.65e-4   NR MBK8198067.1 1978231 g9565 i0 66.7 1.0427807486631 30 10 48.1 0 82 171 17 46 MBK8198067.1 YqaE/Pmp3 family membrane protein [Acidobacteriota bacterium] diamond 195 43.5 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
28448436 28448436 PRJNA1010662_P_NODE_7286_length_208_cov_1.295597_g7227_i0 PRJNA1010662 7286 208 1.295597 2.69484176 Cyanobacteriota/Melainabacteria group 1798711 Bacteria Bacteria 84 9.59e-19   NR PYS89096.1 1978231 g7227 i0 61.2 8.8125 67 24 93.8 1 207 13 64 130 PYS89096.1 MAG: hypothetical protein DMF64_18550 [Acidobacteriota bacterium] diamond 1833 84 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
28708475 28708475 PRJNA1010662_P_NODE_12027_length_171_cov_1.672131_g11968_i0 PRJNA1010662 12027 171 1.672131 2.85934401 Acidobacteriota bacterium 1978231 Bacteria Bacteria 47 4.49e-4   NR MBI1355437.1 1978231 g11968 i0 40 0.964912280701754 55 32 96.5 1 6 170 129 182 MBI1355437.1 hypothetical protein [Acidobacteriota bacterium] diamond 165 47 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
28771421 28771421 PRJNA1010662_P_NODE_14727_length_165_cov_0.896552_g14668_i0 PRJNA1010662 14727 165 0.896552 1.4793108 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 74.3 3.96e-14   NR MDX1382162.1 2651171 g14668 i0 56.6 0.963636363636364 53 23 96.4 0 163 5 70 122 MDX1382162.1 transglutaminase-like domain-containing protein [Thermoanaerobaculia bacterium] diamond 159 74.3 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium
29458304 29458304 PRJNA1010662_P_NODE_9190_length_190_cov_1.460993_g9131_i0 PRJNA1010662 9190 190 1.460993 2.7758867 Pseudomonadati 3379134 Bacteria Bacteria 55.8 3.89e-7   NR MBM3776280.1 1978231 g9131 i0 48.3 4.8 60 31 94.7 0 3 182 79 138 MBM3776280.1 calcium/proton exchanger [Acidobacteriota bacterium] diamond 912 56.2 0.99288256227758 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
29560654 29560654 PRJNA1010662_P_NODE_7370_length_207_cov_1.316456_g7311_i0 PRJNA1010662 7370 207 1.316456 2.72506392 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 60.1 1.77e-8   NR HEV2690279.1 2212468 g7311 i0 63.8 2.15942028985507 47 17 68.1 0 199 59 176 222 HEV2690279.1 hypothetical protein [Bryobacteraceae bacterium] diamond 447 60.1 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
29908327 29908327 PRJNA1010662_P_NODE_13411_length_167_cov_0.881356_g13352_i0 PRJNA1010662 13411 167 0.881356 1.47186452 Terracidiphilus sp. 1964191 Bacteria Bacteria 73.2 2.26e-13   NR HUA98825.1 1964191 g13352 i0 60.8 0.916167664670659 51 20 91.6 0 8 160 165 215 HUA98825.1 alginate lyase family protein [Terracidiphilus sp.] diamond 153 73.2 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Terracidiphilus Terracidiphilus sp.
30153152 30153152 PRJNA1010662_P_NODE_14612_length_165_cov_0.896552_g14553_i0 PRJNA1010662 14612 165 0.896552 1.4793108 Bacteria 2 Bacteria Bacteria 68.9 6.86e-12   NR HXZ80567.1 2282142 g14553 i0 62.3 13.5272727272727 53 20 96.4 0 6 164 36 88 HXZ80567.1 acetyl-CoA C-acetyltransferase [Terriglobales bacterium] diamond 2232 68.9 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales     Terriglobales bacterium
30248427 30248427 PRJNA1010662_P_NODE_8952_length_192_cov_1.433566_g8893_i0 PRJNA1010662 8952 192 1.433566 2.75244672 Pseudomonadati 3379134 Bacteria Bacteria 87.8 1.63e-18   NR MFB3851298.1 1978231 g8893 i0 67.7 3.9375 62 20 96.9 0 192 7 54 115 MFB3851298.1 ADP-forming succinate--CoA ligase subunit beta [Acidobacteriota bacterium] diamond 756 88.2 0.99546485260771 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
30287686 30287686 PRJNA1010662_P_NODE_14712_length_165_cov_0.896552_g14653_i0 PRJNA1010662 14712 165 0.896552 1.4793108 Acidobacteriota bacterium 1978231 Bacteria Bacteria 110 1.7000000000000002e-27   NR NOT28378.1 1978231 g14653 i0 87.3 3 55 7 100 0 165 1 151 205 NOT28378.1 NAD-dependent epimerase/dehydratase family protein [Acidobacteriota bacterium] diamond 495 110 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
30753762 30753762 PRJNA1010662_P_NODE_2434_length_329_cov_1.289286_g2375_i0 PRJNA1010662 2434 329 1.289286 4.24175094 Candidatus Sulfomarinibacter 2885991 Bacteria Bacteria 150 4.459999999999999e-42   NR MCJ7755060.1 2873827 g2375 i0 63.3 7.92401215805471 109 40 99.4 0 327 1 27 135 MCJ7755060.1 thiolase family protein [Thermoanaerobaculales bacterium] diamond 2607 150 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia Thermoanaerobaculales     Thermoanaerobaculales bacterium
31583302 31583302 PRJNA1010662_P_NODE_3336_length_283_cov_2.995726_g3277_i0 PRJNA1010662 3336 283 2.995726 8.47790458 Acidobacteriota bacterium 1978231 Bacteria Bacteria 48.1 4.74e-4   NR MEM7351477.1 1978231 g3277 i0 45 0.636042402826855 60 23 53 1 3 152 138 197 MEM7351477.1 hypothetical protein [Acidobacteriota bacterium] diamond 180 48.1 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
31867647 31867647 PRJNA1010662_P_NODE_10977_length_178_cov_1.178295_g10918_i0 PRJNA1010662 10977 178 1.178295 2.0973651 Acidobacteriota bacterium 1978231 Bacteria Bacteria 51.6 1.09e-5   NR MCC7035360.1 1978231 g10918 i0 50.9 1.90449438202247 55 27 92.7 0 12 176 248 302 MCC7035360.1 NAD-dependent epimerase/dehydratase family protein [Acidobacteriota bacterium] diamond 339 51.6 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
32184284 32184284 PRJNA1010662_P_NODE_16098_length_163_cov_0.903509_g16039_i0 PRJNA1010662 16098 163 0.903509 1.47271967 Holophagaceae bacterium 2052165 Bacteria Bacteria 42 0.0232   NR HTL97863.1 2052165 g16039 i0 43.5 0.846625766871166 46 26 84.7 0 161 24 127 172 HTL97863.1 M13 family metallopeptidase [Holophagaceae bacterium] diamond 138 42 1 Bacteria   Pseudomonadati Acidobacteriota Holophagae Holophagales Holophagaceae   Holophagaceae bacterium
32374182 32374182 PRJNA1010662_P_NODE_10299_length_182_cov_1.563910_g10240_i0 PRJNA1010662 10299 182 1.56391 2.8463162 Acidobacteriota bacterium 1978231 Bacteria Bacteria 45.4 0.00184   NR MBI4905399.1 1978231 g10240 i0 50 5.83516483516483 50 23 82.4 1 180 31 449 496 MBI4905399.1 hypothetical protein [Acidobacteriota bacterium] diamond 1062 45.4 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
32564149 32564149 PRJNA1010662_P_NODE_519_length_684_cov_5.781102_g469_i0 PRJNA1010662 519 684 5.781102 39.54273768 Acidobacteriota bacterium 1978231 Bacteria Bacteria 135 4.889999999999999e-37   NR MDQ7008653.1 1978231 g469 i0 75.5 0.447368421052632 102 25 44.7 0 89 394 8 109 MDQ7008653.1 NFYB/HAP3 family transcription factor subunit [Acidobacteriota bacterium] diamond 306 135 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;